Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 213 a.a., putative transporter, required for glycine and L-alanine utilization (from data) from Shewanella sp. ANA-3

 Score = 90.1 bits (222), Expect = 3e-23
 Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 12  IIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRSPNDMGV 70
           +IG+LA A+ GAL   +K +DL G++++G  TA+GGG  RD+L+   P   + + + +  
Sbjct: 12  LIGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMLLGNYPLIWVENVHYLLA 71

Query: 71  ALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIIILATL 130
                   + I  V      +K  + I DA+GL+ F+  GA        S    +++  +
Sbjct: 72  IAFASLLTVAIAPVMR--YLSKLFLAI-DALGLAVFSIVGAQKTLMLGFSPTIAVVMGLV 128

Query: 131 TGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICSIVVLMI 190
           TGV GG+I DIL  + P    ++ YA  S+  A  +       L+  ++ V+C  +   +
Sbjct: 129 TGVFGGVIRDILCNQVPLIFKKELYAVISLFTAGLYITLNAYQLAEWINLVVCLTLGFSL 188

Query: 191 RIVAILCKWSLPKF 204
           R++A+   WS+P F
Sbjct: 189 RMLALRYHWSMPTF 202



 Score = 45.4 bits (106), Expect = 8e-10
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIP 59
           +F  ++ +GL  F++VGA K +  G      +V+G++T + GG+ RD+L N +P
Sbjct: 92  LFLAIDALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTGVFGGVIRDILCNQVP 145