Pairwise Alignments

Query, 234 a.a., TrmJ/YjtD family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 252 a.a., RNA methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 5   VILVNPKYGGNLGAIARNMMNFDVEELRIVGTPEILDDEAYIRAVHAKNILNNAKFYSKL 64
           V+LV   + GN+G+ AR M    +  L +       D ++   A  A +IL +A     L
Sbjct: 7   VVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVAPDGQSVALAAGASDILKHAVTVDCL 66

Query: 65  EDAISDIDFTVATTGAVCGDRNVNRVPITPRELAKK--HSSISGTLGIVFGREDDGLKNE 122
           EDAI+D    +AT+      R ++   + PR+  +K   ++++G + IVFGRE +GL N+
Sbjct: 67  EDAIADCSLVIATSAR---SRTLDWPMLDPRQAGEKLAGAAVNGPVAIVFGRESNGLSND 123

Query: 123 DVELCDILVSVPTSNKYPILNLSHAVSVILYE 154
           +++ C+  V++P + +Y  LNL+ AV +I YE
Sbjct: 124 ELQKCNYHVTIPANPEYTSLNLAQAVQIICYE 155



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTPEILDDEAYIRAVHAKNILNNAKFYSK 63
           V I  NP+Y     A A  ++ ++     +   PE ++++AY  A   +N      F+  
Sbjct: 132 VTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAKEQEN------FFVH 185

Query: 64  LEDAISDIDFTV 75
           LE  +    F +
Sbjct: 186 LEKTLLSTGFII 197