Pairwise Alignments

Query, 626 a.a., ATP-dependent endonuclease from Methanococcus maripaludis S2

Subject, 603 a.a., ATP-dependent OLD family endonuclease (RefSeq) from Shewanella amazonensis SB2B

 Score =  111 bits (277), Expect = 1e-28
 Identities = 129/548 (23%), Positives = 229/548 (41%), Gaps = 84/548 (15%)

Query: 3   LSKVHIENYRSIKELDLTFDQGKNVIVGKNNAGKSNIIKAIDIVLGERVPDWNKYENISK 62
           LSK+ I N+RSI  ++ T  +    ++G NNAGKS ++ AID  L +  P          
Sbjct: 5   LSKIKISNFRSIDRIEFTL-RNYTSLIGPNNAGKSTVLSAIDCFLNQIKPQL-------- 55

Query: 63  SDFFNADTSEDILIVCELSKEHGENLKFSNVNNSAFFKVCKS-----NNEQYHVNDLSDI 117
           SD+ N +  E ++I C  +            N   +   C        N + H+  ++  
Sbjct: 56  SDWRNHNYDEPVIIECLFT------------NLQPWESTCPGVAGIVQNNEIHLRLVASA 103

Query: 118 DRIFYFTSEKGSIDLDSGIY-RKIWIGGKNYCKIDYDDEFSNVDRYALVFRARFEENVIK 176
           D          S++++   Y R+  I G +    D       +      F     + V  
Sbjct: 104 D------VANSSVNVEYEAYIREEQIEGWSSGWRDLSQTIKEIASER-GFNGTSWKTVSN 156

Query: 177 KDLVLLYKKDDEEE--------WTV-GINAN-SLRGNLIQSAIIPSFRDPKDQLRINNYT 226
           ++++  + +++  E        WT  GI+   +L+  L +  +IP+     D L+    +
Sbjct: 157 REVIKQHLRENHPELIAAGDYIWTSEGISIKPALQQALPKCVVIPAVSKIGDDLKTTGKS 216

Query: 227 WFGKLLKEYT-----KGRNGEGIKEALKNLAT----ESNQVFEELQK--SVCNDNIQIAF 275
            F +LL         +     G++ A++ L      +S   FEE+++   +  + +  + 
Sbjct: 217 PFNQLLSSVVMPAVARSEEFRGLQSAIQLLTDKMRGQSEDEFEEIRRITDLLTERLS-SI 275

Query: 276 PNTSFSVQYNPDPKDQDIYKSALIYVDDGFKSELKDKGSGIQSAMTIGLFNFYIKHIAHN 335
            +    +  N    ++ I   A + V+DG  +   ++GSG Q A+T  L     K     
Sbjct: 276 LDAEVIMSLNSPDFEKFINSGATLLVNDGHTTSPDNQGSGAQRALTFALLETITKMEIAQ 335

Query: 336 SG-----SLLAIEEPELYLHPHGRRIISDRLSEFIGEDENQVILTTHSPEFICCANENIN 390
            G     +LL  EEPELY+HPH  R +   L      +  QVI TTHSP  I  A++ ++
Sbjct: 336 EGEQVKSTLLLFEEPELYIHPHLMRKLKSILETIGASNHWQVISTTHSPFLIDVASDPMS 395

Query: 391 LIVVKKD---------KSESKAYNLQFNDIKTRQIL-----IKKQNSEMFFADAVLLVEG 436
           L++V ++         + +S  ++   N  + RQ L           E FFA  V+LVEG
Sbjct: 396 LVLVSRNGRGSPTELKQLQSDPFSNVENGDRERQALRATLDFHPTVCEAFFASRVVLVEG 455

Query: 437 ADKYILEEFSKEYGETKQVKSESELLGKNWLNNYNVSIINCGGKTELQKYVAVLNNLSIP 496
             +  +  F + Y     ++ ++        N  N +I++CGGK  +     +L N  +P
Sbjct: 456 DTEVAI--FKRAYEILDALEMDTS-------NVENTTIVSCGGKWTIPAIARLLANFEVP 506

Query: 497 NYTLADFD 504
              + D D
Sbjct: 507 FRIVHDLD 514