Pairwise Alignments

Query, 626 a.a., ATP-dependent endonuclease from Methanococcus maripaludis S2

Subject, 607 a.a., AAA family ATPase from Methanococcus maripaludis JJ

 Score = 68.6 bits (166), Expect = 8e-16
 Identities = 112/535 (20%), Positives = 217/535 (40%), Gaps = 89/535 (16%)

Query: 1   LYLSKVHIENYRSIKELDL---TFDQGKNVIVGKNNAGKSNIIKAIDIVLGERVPDWNK- 56
           L L ++HI+N+RSIK+  +   T D    +  G N +GKSNI+K+I +    +  ++ K 
Sbjct: 2   LELKEIHIKNFRSIKDQIIRIPTSDNKYTMFFGVNGSGKSNILKSISVFDKPKTLNYVKD 61

Query: 57  --------YENISKSDFFNADTSEDILIVCELSKEHGENLKFS-NVNNSAFFKVCKSNNE 107
                    ENI  +  F  ++ + I I+ ++S    +NL  + +++      V K +N 
Sbjct: 62  CNMEAQENNENIMFTYKFWLNSDDRINILTKISSIIPKNLASAISISGVNVILVKKPDNS 121

Query: 108 QYHVN--------DLSDIDRIFYFTSEKGSIDLDSGIYRKIWIGGKNYCKIDYDDEFSNV 159
           +  V         DLSD             I+  S  +    I  KN    +    + ++
Sbjct: 122 ETAVTYNLLTTYPDLSDY-----------RINPTSNNH----IINKNDVPAENSPNYISI 166

Query: 160 DRYALVFRARFEENVIKKDLVLLYKK----DDEEEWTVGINANSLRGNLIQSAIIPSFRD 215
            +  +   ++  +N + +DL     K    +  E++ +G   N          ++   ++
Sbjct: 167 SKEKI---SQLVQNAVLEDLKKAIPKFIFWESSEKYLIGQPIN----------LVNFKQN 213

Query: 216 PKDQLRINNYTWFGKLLKEYTKGRNGEGIKEALKNLATESNQVFEELQKSVCNDNIQIAF 275
           P   + + N  +    L  Y K  N   I + + N  +  +  +E     V   +IQ  +
Sbjct: 214 PNISVPLKNIFY----LAGYEKNMNS--ILDQIMNKESARDN-YESKLSDVATAHIQQLW 266

Query: 276 PNTSFSVQYNPDPKDQDIYKSALIYVDDG--FKSELKDKGSGIQSAMTIGLFNFYIKH-I 332
           P     ++   +     +    L Y +D    K E+ ++  G +  M+I L N  +++ I
Sbjct: 267 PEHKIKIKVRLESTTCTV----LTYDEDTPYRKMEMTERSDGFKQFMSI-LLNLSVQNKI 321

Query: 333 AHNSGSLLAIEEPELYLHPHGRRIISDRLSEFIGEDENQVILTTHSPEFICCANENINLI 392
                +++ I+EPE++LHP G   + D L        N V L+THS        +  N +
Sbjct: 322 ESLKNNVIIIDEPEVHLHPSGVEYLRDELLNI--SKNNVVFLSTHS--IFMVKKDLKNHL 377

Query: 393 VVKKDKSESKAYNLQFNDIKTRQILIKKQNSEM--FFADAVLLVEGA-DKYILEEFSKEY 449
           +V K    +    +  N     +++ +   + +     + +L+ EG  D+ + E F K+ 
Sbjct: 378 IVSKKNGNTIIEEIDVNFPIKEEVIYRALGTSLKNILGNNILVFEGPNDRKLYETFVKQV 437

Query: 450 GETKQVKSESELLGKNWLNNYNVSIINCGGKTELQKYVAVLNNLSIPNYTLADFD 504
            + K +                V   + GG  E+ K+V   N   +P + + D D
Sbjct: 438 FDQKIIN--------------EVRCTDAGGTPEVLKWVKFFNTDIVPGFVVLDSD 478