Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 615 a.a., ATP-dependent metalloprotease FtsH from Pseudomonas stutzeri RCH2

 Score = 53.1 bits (126), Expect = 3e-11
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 57/252 (22%)

Query: 4   WVEKYRPKSLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTL 55
           +VE     S  DVAG ++ K  L E IE +        +GG+  K +LL GPPG+GKT L
Sbjct: 147 YVETDMKVSFADVAGVDEAKDELKEIIEFLRDPQTYGRLGGRMPKGVLLVGPPGTGKTLL 206

Query: 56  AYAIANDYAFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL 109
           A A+A +       ++ S     + +   VG  A        ++      +I +DE+D L
Sbjct: 207 ARAVAGEAKVPFFSISGS-----EFVEMFVGVGAARVRDLFEQARAQAPAIIFIDELDAL 261

Query: 110 ----------SGNDDR------------GGVAEIIKVLKTAEN------PVILTANDVYK 141
                      G+D++            G       VL  A N      P +L A    +
Sbjct: 262 GRARGAGPLSGGHDEKEQTLNQLLVEMDGFDTSSGLVLLAATNRPEILDPALLRAGRFDR 321

Query: 142 PALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGFEID-EKIIKMIASHSGGDLRAAIN 200
             L+   + V  + + +VH       L++  L  G ++D + I  +    +G DL   +N
Sbjct: 322 QVLVDRPDKVGRVQILNVH-------LKKSRL--GTDVDPQAIAALTPGFTGADLANLVN 372

Query: 201 DLQSLATGGSIE 212
           +   LAT  + E
Sbjct: 373 EATLLATRRNAE 384