Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 651 a.a., ATP-dependent zinc metalloprotease FtsH from Vibrio cholerae E7946 ATCC 55056

 Score = 51.6 bits (122), Expect = 8e-11
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 46/276 (16%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           + +DVAG ++ K+ + E ++ +        +GG+    +L+ GPPG+GKT LA AIA + 
Sbjct: 154 TFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAGEA 213

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     D +   VG  A+       ++      +I +DE+D +        
Sbjct: 214 KVPFFTISGS-----DFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGV 268

Query: 110 -SGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALMTLRNSVNLINVGSVHT 161
             G+D+R      + V     +  E  +++ A    DV  PAL+        + VG    
Sbjct: 269 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 328

Query: 162 NSIPPVL----RRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGS------I 211
                +L    R++ L    E    I +     SG DL   +N+    A  G+      +
Sbjct: 329 RGREQILKVHMRKVPLANDVE-PSLIARGTPGFSGADLANLVNEAALFAARGNKRNVSMV 387

Query: 212 EIEDAKELPDRDSEKSIFDAMRIIMKTTHYDIATSA 247
           E E AK+     +E+        I ++T Y  A  A
Sbjct: 388 EFELAKDKIMMGAERRSMVMSEEIKESTAYHEAGHA 423