Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 630 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 28/125 (22%)

Query: 14  NDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDYAF 65
           +DVAG  + K+ L E +  +        +G +  K +LL GPPG+GKT LA AIA +   
Sbjct: 174 DDVAGIEEAKEELQEVVTFLKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV 233

Query: 66  DVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL---------S 110
               ++ S     + +   VG  A+       K+      ++ +DE+D +          
Sbjct: 234 PFFSISGS-----EFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGG 288

Query: 111 GNDDR 115
           GND+R
Sbjct: 289 GNDER 293