Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 613 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 47/250 (18%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           + NDVAG ++ K  L E ++ +        +G Q  K +LL GPPG+GKT LA A+A + 
Sbjct: 156 TFNDVAGIDQAKLELTEVVDFLKNADRFTAVGAQIPKGVLLVGPPGTGKTLLAKAVAGEA 215

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     + +   VG  A+       ++      ++ +DE+D +        
Sbjct: 216 GVPFFSISGS-----EFVEMFVGVGASRVRDLFEQAKASAPCIVFIDEIDAVGRQRGAGL 270

Query: 110 -SGNDDRGGVAEIIKVLKT------AENPVILTA----NDVYKPALMTLRNSVNLINVGS 158
             GND+R    + +  L T        + +I+ A     DV   ALM        + V  
Sbjct: 271 GGGNDER---EQTLNQLLTEMDGFEGNSGIIIVAATNRPDVLDAALMRPGRFDRQVVVDR 327

Query: 159 VHTNSIPPVLRRIALKEGFEID---EKIIKMIASHSGGDLRAAINDLQSLATGGS---IE 212
              N    +LR  A  +    D   +KI +     +G DL   +N+   LA   S   I 
Sbjct: 328 PDYNGRLEILRVHARGKSLSKDIDLDKIARRTPGFTGADLSNLLNEAAILAARRSLAEIS 387

Query: 213 IEDAKELPDR 222
           +++  +  DR
Sbjct: 388 MDEVNDAIDR 397