Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 442 a.a., recombination factor protein RarA (RefSeq) from Shewanella amazonensis SB2B

 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 12/222 (5%)

Query: 7   KYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAFD 66
           + RP S+ +  G +          ++++ G+    +LL GPPG+GKTTLA  +A      
Sbjct: 17  RMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHS-MLLWGPPGTGKTTLAELVARYANAH 75

Query: 67  VIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGV-----AEI 121
           V  ++A     K++ + +      ++S  G+RTL+ +DEV   + +     +       +
Sbjct: 76  VERISAVTSGVKEIRAAIEQAKNVAQS-RGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 134

Query: 122 IKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGFEIDE 181
           I +  T ENP     N +     + L   +    +G +   +     R +  K G  +  
Sbjct: 135 IFIGATTENPSFEVNNALLSRCRVYLIKRLEDDAIGQILAQANSDEARGLG-KRGLLLKA 193

Query: 182 KIIKMIASHSGGDLRAAINDLQ----SLATGGSIEIEDAKEL 219
           ++   IA    GD R A+N L+     L  GG   +E   E+
Sbjct: 194 ELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEV 235