Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 659 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 49/264 (18%)

Query: 7   KYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAY--------- 57
           KYRP S + + G     + L   I+S   G+  +  +L G  G GKTT A          
Sbjct: 44  KYRPASFDALIGQEALVRTLTNAIDS---GRLAQAWMLTGVRGVGKTTTARLIARALNCV 100

Query: 58  --------------------AIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGR 97
                               AIA D   DV+E++A+ +     I +++      +    R
Sbjct: 101 GADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREIL-DGVRYRPAVAR 159

Query: 98  RTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP----VILTANDVYKPALMTLRNSVNL 153
             + ++DEV  LS        A    +LKT E P      + A    +   +T+ +    
Sbjct: 160 TKVYIIDEVHMLS-------TAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQR 212

Query: 154 INVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDL-QSLATGG--- 209
            ++  V    +     RIA  EG EI    + +IA  + G +R  ++ L Q++A GG   
Sbjct: 213 FDLRRVSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAIAHGGGTV 272

Query: 210 -SIEIEDAKELPDRDSEKSIFDAM 232
              ++ +   L DR     + DA+
Sbjct: 273 SEAQVAEMLGLADRARIFDLLDAL 296