Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 655 a.a., ATP-dependent metalloprotease FtsH (RefSeq) from Shewanella loihica PV-4

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 38/240 (15%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           +  DVAG ++ K+ + E ++ +        +GG+    +LL GPPG+GKT LA AIA + 
Sbjct: 155 TFGDVAGCDEAKEDVKELVDYLKEPTKFQKLGGRIPTGVLLVGPPGTGKTLLAKAIAGEA 214

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     D +   VG  A+       ++      +I +DE+D +        
Sbjct: 215 KVPFFTISGS-----DFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGV 269

Query: 110 -SGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALMTLRNSVNLINVGSVHT 161
             G+D+R      + V     +  E  +++ A    DV   AL+        + VG    
Sbjct: 270 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDV 329

Query: 162 NSIPPVLRRIALKEGFEIDEK---IIKMIASHSGGDLRAAINDLQSLATGGSIEIEDAKE 218
                +L+    K     D K   I +     SG DL   +N+    A  G+  +   +E
Sbjct: 330 RGREQILKVHMRKVPLADDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 389