Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 337 a.a., Holliday junction DNA helicase B (RefSeq) from Shewanella loihica PV-4

 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 9   RPKSLNDVAGHNKTKQALIEWIESIIG-GQNQKPILLAGPPGSGKTTLAYAIANDYAFDV 67
           RPK L++  G + T+  L  +IE+    G+    +L+ GPPG GKTTLA  +AN      
Sbjct: 27  RPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVAN------ 80

Query: 68  IELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLS 110
            E+  + K     + +  G  A   +      ++ +DE+  LS
Sbjct: 81  -EMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLS 122