Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis JJ

 Score = 52.8 bits (125), Expect = 4e-11
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 29/218 (13%)

Query: 34  IGGQNQKPILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATS-- 91
           +G +  K +LLAGPPG+GKT LA A+AN+   +   +N       +++S+ VG    +  
Sbjct: 206 LGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTIN-----GPEIMSKYVGETEENLR 260

Query: 92  ----KSLTGRRTLIVLDEVDGL-------SGNDDRGGVAEIIKVLKTAENP---VILTAN 137
               ++     ++I +DE+D +       SG  +R  VA+++ ++   E+    VIL A 
Sbjct: 261 KIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAAT 320

Query: 138 DVYKPALMTLRNSVNL---INVGSVHTNSIPPVL----RRIALKEGFEIDEKIIKMIASH 190
           +      M LR    L   I +G    +    +L    R + L+  +E  + +I ++   
Sbjct: 321 NRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRNMPLQPDYEKSD-VISILNEL 379

Query: 191 SGGDLRAAINDLQSLATGGSIEIEDAKELPDRDSEKSI 228
            G   R+ I  L  L    S E E  K L D + E  +
Sbjct: 380 VGEYDRSKIESLVKLVEKASSEEEIEKILKDGEVEDKV 417



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 54/242 (22%)

Query: 14  NDVAGHNKTKQALIEWIESII---------GGQNQKPILLAGPPGSGKTTLAYAIANDYA 64
           +DV G    KQ L E +E  I         G +  K +LL GPPG+GKT LA A+AN+  
Sbjct: 507 SDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANE-- 564

Query: 65  FDVIELNASDKRNKDVISQVVGTAATS------KSLTGRRTLIVLDEVDGLS---GND-D 114
               E N    +  ++ S+ VG +  +      K+     T+I  DE+D ++   G D  
Sbjct: 565 ---SEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFG 621

Query: 115 RGGVAE-----IIKVLKTAENP---VILTAN---DVYKPALM-----------TLRNSVN 152
             GV E     ++  L   E P   VI+ A    D+   AL+            + N   
Sbjct: 622 SSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETA 681

Query: 153 LINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGSIE 212
            + +  VHT  + P+ + + L       EK+ K    ++G D+ A   +   +A   +I 
Sbjct: 682 RLEIFKVHTKGM-PIGKDVNL-------EKLAKETKGYTGADIEAVCREAAMIALRENIN 733

Query: 213 IE 214
            E
Sbjct: 734 SE 735