Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 680 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 42  ILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLI 101
           ++L+GPPG+GKT   + +A  + F+++ +  SD  +K V       A   +    ++ L+
Sbjct: 479 VMLSGPPGTGKTAWVHHLAETHGFELMHIKCSDVLSKYVGDSEQNIARLFRDAHRQQKLM 538

Query: 102 VLDEVDGLSGNDDRGG-------VAEIIKVLKTAENPVILTAN 137
           ++DEVD L    D          V E+I  L+    PV    N
Sbjct: 539 LIDEVDSLLSKRDSAQALHEVQLVNELISQLECNTLPVFAATN 581



 Score = 28.5 bits (62), Expect = 8e-04
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 42  ILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLT------ 95
           ILL G  G+GKT LA  +A     +++E+ +         S  + T ATS  L       
Sbjct: 230 ILLYGKAGTGKTELARTLAKTIKRNLLEVQSQQLIGSQYRSDSI-TKATSIRLVHLSLLQ 288

Query: 96  -----GRRTLIVLDEVDGLSGN-DDRGGVAEIIKVLKTAENPVILTANDV 139
                   +L+++DE + L    D++    ++++ L+    P I   N V
Sbjct: 289 GLLAHSNDSLLLVDECEALFVQADEQYSKEQLMQALEQNPVPAIWITNHV 338