Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 443 a.a., replication-associated recombination protein A from Dyella japonica UNC79MFTsu3.2

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 15/209 (7%)

Query: 6   EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAF 65
           E+ RP+SL+++ G  +          ++  G+    +L  GPPG GKTTLA  +A     
Sbjct: 22  ERMRPRSLDEIVGQQRVLAPGKALRRALEAGRVHSMVLW-GPPGCGKTTLALLVARYADA 80

Query: 66  DVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEV--------DGLSGNDDRGG 117
           D   ++A      +V   +    A +    GRRT++ +DEV        D    + +RG 
Sbjct: 81  DFRAISAVLSGLPEVRKAL--AEAEANFAQGRRTVLFVDEVHRFNKAQQDAFLPHIERG- 137

Query: 118 VAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGF 177
              II V  T ENP     + +     + +  +V+  ++      ++    R +   +G 
Sbjct: 138 --VIIFVGATTENPSFELNSALLSRCRVHVLEAVSADDIVGALKRALEDAERGLG-GQGL 194

Query: 178 EIDEKIIKMIASHSGGDLRAAINDLQSLA 206
            + +  +++IA  + GD+R A+  L+  A
Sbjct: 195 TVSDASLQLIARAADGDVRRALTLLEIAA 223