Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 696 a.a., AAA-metalloprotease FtsH, with ATPase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 41/230 (17%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           +  DVAG  + KQ + E +E +        +GG+  K  LL GPPG+GKT LA A+A + 
Sbjct: 175 TFKDVAGLAEAKQEVEEIVEFLKEPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 234

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVD---------- 107
                 L  S     D +   VG  A+       ++      ++ +DE+D          
Sbjct: 235 NVPFFSLAGS-----DFVEMFVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNP 289

Query: 108 GLSGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALMTLRNSVNLINVGSVH 160
            + GND+R      +        +    +IL A    DV   AL+        I+V    
Sbjct: 290 AMGGNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPD 349

Query: 161 TNSIPPV----LRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLA 206
            N    V    LR I + +  ++D  + +     SG D+    N+   +A
Sbjct: 350 LNERKEVFGVHLRPIKIDDTVDVD-LLARQTPGFSGADIANVCNEAALIA 398