Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 343 a.a., Holliday junction DNA helicase ruvB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 45.1 bits (105), Expect = 4e-09
 Identities = 79/317 (24%), Positives = 124/317 (39%), Gaps = 48/317 (15%)

Query: 9   RPKSLNDVAGHNKTKQALIEWIESI-IGGQNQKPILLAGPPGSGKTTLAYAIANDYAFDV 67
           RP S  D +G +K  + L  ++++  + G+    +LL GPPG GKTTL+  IAN      
Sbjct: 25  RPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIAN------ 78

Query: 68  IELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSG---------------- 111
            EL    K     +    G  A   +      ++ +DE+  LS                 
Sbjct: 79  -ELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRID 137

Query: 112 -NDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRR 170
              D+G  A  I++       V  T       A +  R  +NL ++     + +  ++RR
Sbjct: 138 IMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL-HLEYYDDDILSNIIRR 196

Query: 171 IALKEGFEIDEKIIKMIASHSGGDLRAA------INDLQSLATGGSIEIEDAK-ELPDRD 223
            A         +    IAS S G  R A      + D   +   GSI+ E A+  L   +
Sbjct: 197 SASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALN 256

Query: 224 SEKSIFDAMRIIMKTTHYD--------IATSATRDVKEDIGTIEE-----WISENLPKEY 270
            +K   D +   +  T  D        + T AT  + ED GTIEE      I E   K  
Sbjct: 257 IDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATA-LGEDAGTIEEVYEPFLIKEGFMKRT 315

Query: 271 LKYKDLAE-GYDYLSKS 286
            + +++ E  Y +L +S
Sbjct: 316 PRGREVTELAYKHLGRS 332