Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 619 a.a., DNA polymerase III subunit gamma/tau (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 47/253 (18%)

Query: 1   MEEWV---EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQN-QKPILLAGPPGSGKTTLA 56
           ME ++    KYRP +   V G    ++AL   +++ I  Q      L  GP G GKTT A
Sbjct: 1   MENYIVSARKYRPSTFESVVG----QRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCA 56

Query: 57  -------------------------YAIANDYAFDVIELNASDKRNKDVISQVVGTAATS 91
                                     A     ++++ EL+A+   + D I Q+V      
Sbjct: 57  RIFAKTINCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116

Query: 92  KSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP----VILTANDVYKPALMTL 147
             + G+  + ++DEV  LS        +     LKT E P    + + A       L T+
Sbjct: 117 PQI-GKYKVYIIDEVHMLS-------ASAFNAFLKTLEEPPRHAIFILATTEKHKILPTI 168

Query: 148 RNSVNLINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLA- 206
            +   + +   +        L  +A KE    + + + +IA  + G +R A++    +  
Sbjct: 169 LSRCQIYDFNRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVS 228

Query: 207 -TGGSIEIEDAKE 218
            TGG+I  +   E
Sbjct: 229 FTGGNITYKSVIE 241