Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella sp. ANA-3

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 42  ILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLI 101
           ++L GPPG+GKTTLA  IA+     V  ++A     KD+ + +    A ++S  G+RTL+
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAQAVAQS-RGQRTLL 110

Query: 102 VLDEVDGLSGNDDRGGV-----AEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINV 156
            +DEV   + +     +       +I +  T ENP     N +   A + L   ++   +
Sbjct: 111 FVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEI 170

Query: 157 GSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQ----SLATGGSIE 212
             + T ++    R +  ++   +   ++  +A    GD R A+N L+     +A GGS  
Sbjct: 171 VHIITQALTDPERGLGQRQ-LVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFT 229

Query: 213 IE 214
            E
Sbjct: 230 TE 231