Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 657 a.a., membrane protease FtsH catalytic subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 41/253 (16%)

Query: 15  DVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDYAFD 66
           DVAG ++ K+ + E ++ +        +GG+    +L+ GPPG+GKT LA AIA +    
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGESKVP 222

Query: 67  VIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL---------SG 111
              ++ S     D +   VG  A+       ++      +I +DE+D +          G
Sbjct: 223 FFTISGS-----DFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGG 277

Query: 112 NDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALMTLRNSVNLINVGSVHTNSI 164
           +D+R      + V     +  E  +++ A    DV   AL+        + VG       
Sbjct: 278 HDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDVRGR 337

Query: 165 PPVL----RRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGSIEIEDAKELP 220
             +L    R++ L E  +    I +     SG DL   +N+    A  G+  +   +E  
Sbjct: 338 EQILKVHMRKVPLSEDVKA-SVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEEF- 395

Query: 221 DRDSEKSIFDAMR 233
           +R  +K +  A R
Sbjct: 396 ERAKDKIMMGAER 408