Pairwise Alignments

Query, 414 a.a., phenylacetate--CoA ligase from Methanococcus maripaludis S2

Subject, 408 a.a., putative phenylacetate-coenzyme A ligase (RefSeq) from Shewanella loihica PV-4

 Score =  110 bits (274), Expect = 1e-28
 Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 21/365 (5%)

Query: 4   KQLETYALVKKLLRHVSEGSEFYKNKFSKAGINIDEISSLEDFKKIPFTEKEEL---RSA 60
           ++ +  A + + L +      +Y    +   I +  I S E    +P T K +L   ++ 
Sbjct: 16  REQQLMAALPEQLSYAKANCRYYAELLTD--IEVSSIDSREALATLPITHKADLIALQAK 73

Query: 61  YPLGLQAVPDEKIVRIHSSSGTTGSPVIIPYTQKDVDTWSEMMMRCYQMAGVTNKDRIQI 120
            P      P +   RI  S G    P    +     D W   M + +  AG    D +Q 
Sbjct: 74  LPPFAGMTPRKPSGRIFQSPGPIYDPECDGH-----DWWR--MGQAFFAAGFRAGDLVQN 126

Query: 121 TPGYGLWTAGIGFQLGAERLGAMAIPMGPGNTEKQLQMMVDLKSTILTSTSSYALLLAEE 180
              Y L   G     GA   G   IP GPG +E QL ++  LK      T S+  +L E+
Sbjct: 127 CLAYHLTPGGFIMDSGARACGCTVIPAGPGQSEMQLDLIASLKPNGYCGTPSFLNILLEK 186

Query: 181 IRKKGIHDKIHLKIGVIGSERWSEKMRNRIES-ELGIKSFDIYGLTEIYGPGIALDCEYH 239
             K    D   +   ++  E  +  ++   E+ ++ +K   +     +    IA +    
Sbjct: 187 -GKALSKDTSSITKALVSGEVLTPSLKASFEAADIDVKQAYVTADIGL----IAFESVSG 241

Query: 240 EGMHYWSDHLLFEIIDPVTGENLPDGELGELVITTLTKEGAPLIRYRTRDLTRIIPEKCK 299
           EG+    D ++ EI+ P T   +P+GE+GE+V+T+  ++  PL+R+ T DL+ I+P    
Sbjct: 242 EGLVVAED-IIVEIVRPGTLTPVPEGEVGEVVVTSFNRD-YPLVRFATGDLSAIMPGTSA 299

Query: 300 CGSEYPRIDRILGRADDRIKIKGVNIYPGQIEDLIHKLNGVSSEYQIVLSRFEGRDSMLF 359
           CG    RI   +GRAD   K+KG+ ++P Q+E +  +  G+  + ++V++R +  D M  
Sbjct: 300 CGRTNVRIKGWMGRADQTTKVKGLFVHPEQVERIRRRHPGI-VKVRLVVTRQQDNDLMRL 358

Query: 360 RVEVD 364
             EVD
Sbjct: 359 LCEVD 363