Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 386 a.a., hydrogenase expression/formation protein HypD (RefSeq) from Shewanella amazonensis SB2B

 Score =  263 bits (671), Expect = 8e-75
 Identities = 150/345 (43%), Positives = 211/345 (61%), Gaps = 15/345 (4%)

Query: 22  QKLSEKLDEVKIMHVCGSHEHTICKYGIRDVLPDNITVVPGPGCPVCVTTQKEIDKAMYL 81
           Q LSE L    IM VCG H HTI KYG+  ++PDN+  + GPGCPVCV  ++ ID+A+ L
Sbjct: 40  QNLSEPL---YIMEVCGGHTHTIMKYGLLGLIPDNVKFIHGPGCPVCVMPKERIDQAIAL 96

Query: 82  AEQGYTIA-TLGDMYRVPGSKKSLMQLQSEGADVKIVYGIGDAVKLAKKQDEK-VVFVAI 139
           A+    I  TLGDM RVPGSK SL Q ++ GADV+ +Y   DA+ +A+   +K VVF AI
Sbjct: 97  AKMDDVILLTLGDMIRVPGSKGSLAQARASGADVRPLYDPLDALAIARDNPDKTVVFFAI 156

Query: 140 GFETTAPTTAAELLNKPENFYILN-----SHRQTPPVMGFLLGGGTSLNLDGFICPGHVS 194
           GFET+ P TA  LL + E+  + N     +H   PP +  ++    +  ++ FI P HVS
Sbjct: 157 GFETSTPMTAV-LLQQAEHAALPNLLFHINHVLVPPAIDAVMAEPAT-KVNAFIGPAHVS 214

Query: 195 TITGLKPYYDPCKTYHAPMVVAGFEPIDVMASIVMILKQLVNGEAKVENEYTRGVREEGN 254
            I+G K Y      +H P+VV+GFEP+DVM SI+ +++     E+ V+ +Y+R V EEGN
Sbjct: 215 VISGAKIYRRAADVHHTPVVVSGFEPVDVMESILRLVELKNLTESVVDVQYSRAVSEEGN 274

Query: 255 VIAQKIMNKVFEPAD-VAWRGFPVIKDGGMKLREEFKKYD--VHENIDVPDIKETINKAC 311
           + AQ ++++ FE  D   WRG   I    +KL+ ++   D  +H    +P  +   +KAC
Sbjct: 275 LTAQALVDEYFEVRDSFRWRGLGPIPQSALKLKGKYAHRDAEIHFGGRLPVQEIDDHKAC 334

Query: 312 ICSEILRGEKLPHDCKLFGKTCDPMNPVGSCMVSDEGTCRIFYKY 356
            C +ILRG   P DCK+FG+ C P  P+GSCMVS EG C  +Y+Y
Sbjct: 335 QCGDILRGLANPMDCKVFGRGCTPQTPLGSCMVSSEGACNAYYRY 379