Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 386 a.a., Hydrogenase formation HypD protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  255 bits (651), Expect = 2e-72
 Identities = 137/339 (40%), Positives = 198/339 (58%), Gaps = 14/339 (4%)

Query: 32  KIMHVCGSHEHTICKYGIRDVLPDNITVVPGPGCPVCVTTQKEIDKAMYLAEQGYTI-AT 90
           + M  CG H H I +YG+  +LP+ +T++ GPGCPVCV     ID A+ LA +   I  +
Sbjct: 34  RFMEFCGGHTHAIGRYGLAGLLPEAVTLIHGPGCPVCVLPAGRIDAALALAARPEVILCS 93

Query: 91  LGDMYRVPGS-KKSLMQLQSEGADVKIVYGIGDAVKLAKKQDEK-VVFVAIGFETTAPTT 148
            GD++RVPGS ++S++  ++EGAD+++V     AV +A+   ++ VVF AIGFETTAP +
Sbjct: 94  YGDLFRVPGSARRSMISARAEGADIRMVTSPLQAVTIARDNPQRAVVFFAIGFETTAPAS 153

Query: 149 AA----ELLNKPENFYILNSHRQTPPVMGFLLGGGTSL------NLDGFICPGHVSTITG 198
           AA     L     NF+ L  H  TPP M  +L    +        LDG I PGHV+ ITG
Sbjct: 154 AAAIKASLAAGLTNFHELVCHVLTPPAMAAILAEEATAATDVRPRLDGLIGPGHVALITG 213

Query: 199 LKPYYDPCKTYHAPMVVAGFEPIDVMASIVMILKQLVNGEAKVENEYTRGVREEGNVIAQ 258
           + P+    ++   P+ VAGFEP D++ +++ ++     G A+  N YTR V E GN  AQ
Sbjct: 214 MAPFDRFAQSNGRPIAVAGFEPTDLLQAVLALVTLTNEGAARAVNRYTRAVTEAGNTTAQ 273

Query: 259 KIMNKVFE-PADVAWRGFPVIKDGGMKLREEFKKYDVHENIDVPDIKETINKACICSEIL 317
            ++N+VFE  A   WRG  ++ D  + LR  + ++D  +          +N+AC C +IL
Sbjct: 274 ALLNEVFEVKASAEWRGLGMVADSALALRPAYARFDAEKRFPCDLPPPQVNRACRCPDIL 333

Query: 318 RGEKLPHDCKLFGKTCDPMNPVGSCMVSDEGTCRIFYKY 356
           RG   P DC LFG++C P +PVG+CMVS EG C   Y Y
Sbjct: 334 RGLIAPEDCALFGRSCTPSDPVGACMVSSEGACAAAYAY 372