Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 379 a.a., hydrogenase expression/formation protein HypD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  268 bits (685), Expect = 2e-76
 Identities = 149/357 (41%), Positives = 214/357 (59%), Gaps = 15/357 (4%)

Query: 12  ELIKKSIQTIQKLSEKLDE-VKIMHVCGSHEHTICKYGIRDVLPDNITVVPGPGCPVCVT 70
           + I    Q I K++  L E + IM VCG H HTI KYG+ D+LPDNI  + GPGCPVC+ 
Sbjct: 15  QTIASLAQDIAKVARTLKEPINIMEVCGGHTHTIMKYGLLDLLPDNIEFIHGPGCPVCIM 74

Query: 71  TQKEIDKAMYLAEQGYTI-ATLGDMYRVPGSKKSLMQLQSEGADVKIVYGIGDAVKLAKK 129
            ++ ID+A  LA+Q   I  TLGDM RVPGSK SL   +++G D++ +Y   D +K+A+ 
Sbjct: 75  PKERIDQAAVLAQQEDVILVTLGDMIRVPGSKGSLASFRAKGCDIRPIYDPLDTLKIARD 134

Query: 130 QDEK-VVFVAIGFETTAPTTAAELL----NKPENFYILNSHRQTPPVMGFLLGGGTSLNL 184
              K VVF AIGFET+ P TA  L      K  N +   +H   PP +  ++    +  +
Sbjct: 135 NPHKTVVFFAIGFETSTPMTAVLLQLAEQQKLANVFFHINHVLVPPAIDAVMHDPNA-RV 193

Query: 185 DGFICPGHVSTITGLKPYYDPCKTYHAPMVVAGFEPIDVMASIVMILKQLVNGEAKVENE 244
           + FI P HVS I+G K Y    + Y  P+VV+GFEP+DVM SI+ I++Q   G+A+++ +
Sbjct: 194 NAFIGPAHVSVISGAKIYRPAVEQYGTPVVVSGFEPVDVMESILRIMRQKAAGKAELDIQ 253

Query: 245 YTRGVREEGNVIAQKIMNKVFE-PADVAWRGFPVIKDGGMKLREEFKKYDVH----ENID 299
           Y+R V E+GN+ AQ  + + F+      WRG   I +  ++L+ E+   D        + 
Sbjct: 254 YSRAVSEQGNLAAQAKVEQFFQIRPQFRWRGLGPIPNSALQLKPEYAHRDAELRFKNCLP 313

Query: 300 VPDIKETINKACICSEILRGEKLPHDCKLFGKTCDPMNPVGSCMVSDEGTCRIFYKY 356
           V +I +  +KAC C +ILRG   P DCK+FG+ C+P  P+GSCMVS EG C  +Y+Y
Sbjct: 314 VKEIDD--HKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRY 368