Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 365 a.a., hydrogenase expression/formation protein HypD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  264 bits (675), Expect = 2e-75
 Identities = 137/347 (39%), Positives = 214/347 (61%), Gaps = 13/347 (3%)

Query: 21  IQKLSEKLDE-VKIMHVCGSHEHTICKYGIRDVLPDNITVVPGPGCPVCVTTQKEIDKAM 79
           + +L  +LD  ++ M VCG+H   I + GIR +LP+ +  + GPGCPVCVT + E+   +
Sbjct: 19  LDRLHRELDRPLRFMEVCGTHTVAIFQSGIRPLLPEGVRHLSGPGCPVCVTHESEVAAYL 78

Query: 80  YLAEQG-YTIATLGDMYRVPG-SKKSLMQLQSEGADVKIVYGIGDAVKLAKKQD-EKVVF 136
            LAE+G   IAT GD+ RVPG   ++L   Q++GA +++VY   DA+KLA     EKVVF
Sbjct: 79  QLAERGDVIIATFGDLMRVPGPGGRNLKLAQAQGARIEVVYSSFDALKLAADNPGEKVVF 138

Query: 137 VAIGFETTAPTTAAEL----LNKPENFYILNSHRQTPPVMGFLLGGGTSLNLDGFICPGH 192
           + IGFETTAPT A  +        +NF +L+ H+  PP +  LL       +D F+ PGH
Sbjct: 139 LGIGFETTAPTVAGTVQMARAQGLDNFMVLSFHKLVPPALRALLVD-PECAVDAFLLPGH 197

Query: 193 VSTITGLKPYYDPCKTYHAPMVVAGFEPIDVMASIVMILKQLVNGEAKVENEYTRGVREE 252
           VST+ G++PY      +  P V+AGF+P+D++ +++++++Q   GE  + N Y R V + 
Sbjct: 198 VSTVLGIEPYRFVATEFGTPGVIAGFDPVDILQALLIMVEQRKTGEYGIVNAYRRAVDDA 257

Query: 253 GNVIAQKIMNKVFEPADVAWRGFPVIKDGGMKLREEFKKYDVHENIDV--PDIKETINKA 310
           GN  A+++M+ VF  +D  WRG  ++   G+  R E+ ++D  + + +  P+ ++T    
Sbjct: 258 GNPRARQVMDDVFMQSDALWRGIGLLPGSGLVFRPEYARFDAMQRLGLTLPEARDT--PG 315

Query: 311 CICSEILRGEKLPHDCKLFGKTCDPMNPVGSCMVSDEGTCRIFYKYS 357
           C C ++L+G+  P++C LFGK C P  PVG CMVS EG+C  +YKY+
Sbjct: 316 CKCGDVLKGKMQPNECPLFGKACVPAKPVGPCMVSTEGSCAAYYKYN 362