Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 379 a.a., hydrogenase expression/formation protein HypD (RefSeq) from Shewanella sp. ANA-3

 Score =  272 bits (695), Expect = 1e-77
 Identities = 154/370 (41%), Positives = 220/370 (59%), Gaps = 17/370 (4%)

Query: 1   MDAKIM--NINNKELIKKSIQTIQKLSEKLDE-VKIMHVCGSHEHTICKYGIRDVLPDNI 57
           +D K++     + + I    + I K +  L E + IM VCG H HTI KYG+ D+LP+NI
Sbjct: 2   LDLKLLYQGFRDPDTIASFAEDIAKCARTLKEPINIMEVCGGHTHTIMKYGLLDLLPENI 61

Query: 58  TVVPGPGCPVCVTTQKEIDKAMYLAEQGYTI-ATLGDMYRVPGSKKSLMQLQSEGADVKI 116
             + GPGCPVCV  ++ ID+A  LA+Q   I  TLGDM RVPGS+ SL   +++G D++ 
Sbjct: 62  EFIHGPGCPVCVMPKERIDQAAVLAQQENVILVTLGDMIRVPGSQGSLASFRAKGCDIRP 121

Query: 117 VYGIGDAVKLAKKQDEK-VVFVAIGFETTAPTTAAELL----NKPENFYILNSHRQTPPV 171
           +Y   D +K+A+   +K VVF AIGFET+ P TA  L      K  N     +H   PP 
Sbjct: 122 IYDPLDTLKIARDNPDKIVVFFAIGFETSTPMTAVLLQLAEQEKLANLLFHINHVLVPPA 181

Query: 172 MGFLLGGGTSLNLDGFICPGHVSTITGLKPYYDPCKTYHAPMVVAGFEPIDVMASIVMIL 231
           +  ++    +  ++ FI P HVS I+G K Y    K Y  P+VV+GFEP+DVM SI+ I+
Sbjct: 182 IDAVMQDPKA-RVNAFIGPAHVSVISGAKIYRPAVKQYGTPVVVSGFEPVDVMESILRIV 240

Query: 232 KQLVNGEAKVENEYTRGVREEGNVIAQKIMNKVFEP-ADVAWRGFPVIKDGGMKLREEFK 290
           +Q V G A ++ +Y+R V EEGN+ AQ  +N+ F+      WRG   I +  ++LR E+ 
Sbjct: 241 RQKVAGTALLDIQYSRAVSEEGNLAAQAKVNQFFQTRPQFRWRGLGPIPNSALELRPEYA 300

Query: 291 KYDVH----ENIDVPDIKETINKACICSEILRGEKLPHDCKLFGKTCDPMNPVGSCMVSD 346
             D      + + V +I +  +KAC C +ILRG   P DCK+FG+ C+P  P+GSCMVS 
Sbjct: 301 HRDAEKYFKDRLPVKEIDD--HKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSS 358

Query: 347 EGTCRIFYKY 356
           EG C  +Y+Y
Sbjct: 359 EGACNAYYRY 368