Pairwise Alignments

Query, 153 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 43.9 bits (102), Expect = 5e-09
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 32/141 (22%)

Query: 9   KRPITLNKDDNIEKAISTFRENKISGAPVVEGEKLVGILSESDIIKALTSHDDRFSLVLP 68
           K+P+ L+ + ++  A    R+N++S   +++ +KL GIL++ D                 
Sbjct: 158 KQPLCLDINASVSDAARLMRDNRVSSVLIIDNQKLAGILTDRD----------------- 200

Query: 69  SPFDLIELPLKTAIKIEEFKGDMENALKTEVFEAMTEKVVSVSSETPITNAAEIMVKNKI 128
                    L+  +  E   G +       V +AMT    ++S+   +  A  +M ++ I
Sbjct: 201 ---------LRNRVLAESLDGSL------PVHQAMTVTPTTLSANALVFEAMLLMSQHNI 245

Query: 129 KRLPVVEGEKLAGIVTRGDLI 149
             LP+++     G++T  D++
Sbjct: 246 HHLPIMDEGHPIGVITSTDIL 266



 Score = 33.1 bits (74), Expect = 8e-06
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 8/53 (15%)

Query: 104 TEKVVSVSSETP--------ITNAAEIMVKNKIKRLPVVEGEKLAGIVTRGDL 148
           T +V S+ S+ P        +++AA +M  N++  + +++ +KLAGI+T  DL
Sbjct: 149 TNRVSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLIIDNQKLAGILTDRDL 201



 Score = 25.4 bits (54), Expect = 0.002
 Identities = 10/48 (20%), Positives = 28/48 (58%)

Query: 11  PITLNKDDNIEKAISTFRENKISGAPVVEGEKLVGILSESDIIKALTS 58
           P TL+ +  + +A+    ++ I   P+++    +G+++ +DI++  +S
Sbjct: 224 PTTLSANALVFEAMLLMSQHNIHHLPIMDEGHPIGVITSTDILRGQSS 271