Pairwise Alignments
Query, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942
Score = 122 bits (305), Expect = 2e-32
Identities = 70/303 (23%), Positives = 150/303 (49%), Gaps = 2/303 (0%)
Query: 28 YNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDKALL 87
+N++G+ L + ++++ YN AL P+ E N+ L LG E+ E +++AL
Sbjct: 33 WNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALA 92
Query: 88 IDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAI 147
ID + E +N G VL K G + A+ Y +++ + + ++AW N G L RY EA+
Sbjct: 93 IDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAV 152
Query: 148 DCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLK 207
+++S++I+ S W G+ + + ++++ ++A+ + + TA +G++
Sbjct: 153 RHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYN 212
Query: 208 LQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALE--INPSNSDI 265
L Y +A+ + AE + + + E +E AL Y L + +++
Sbjct: 213 LGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASYAAILPQLTGEAAAEV 272
Query: 266 LISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKALE 325
+G+ +++++AA++ FD AI +P + W + + L ++I+ ++A+
Sbjct: 273 AYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAALHARLDQPVAAIADLQQAIA 332
Query: 326 IEP 328
++P
Sbjct: 333 LDP 335
Score = 119 bits (298), Expect = 1e-31
Identities = 69/286 (24%), Positives = 142/286 (49%), Gaps = 2/286 (0%)
Query: 45 ISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDKALLIDPENSEAFNGLGTVLS 104
++ Y+ L P++ +W N+G L +L + E+ ++ AL I P+ EA N VL
Sbjct: 16 LAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLE 75
Query: 105 KTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVW 164
G +A+E Y+++L ID + E W N+GI L + R +AI + ++I++ A + W
Sbjct: 76 HLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAW 135
Query: 165 YNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETI 224
N G ++ G Y +++ Y +++ ID +A G YL + + A+ C + A +
Sbjct: 136 ANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIAL 195
Query: 225 NPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAIS 284
P+ ++ A + + AL Y+ A + + I +G L +++ Y A++
Sbjct: 196 QPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALA 255
Query: 285 NFDLAI-QLDPK-NVQIWILKGNSYVGLKDYESSISCYKKALEIEP 328
++ + QL + ++ +G + L+D+ ++++ + +A+ P
Sbjct: 256 SYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNP 301
Score = 119 bits (298), Expect = 1e-31
Identities = 65/277 (23%), Positives = 142/277 (51%), Gaps = 2/277 (0%)
Query: 20 IGDQKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGEST 79
I Q+ ++ N++ + L + G +++ Y AL + + E+W N+G L KLG ++
Sbjct: 59 ITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAI 118
Query: 80 ECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNN 139
+ +A+ + ++A+ G L + G Y++A+ Y++S+ ID + S AW+ G +
Sbjct: 119 ASYQQAIALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLS 178
Query: 140 MQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALL 199
+ + +A+ C D++I++ + + W +G + LG+Y ++ SY A L+ ++ +
Sbjct: 179 VDQPDQALRCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSI 238
Query: 200 GKGNSYLKLQNYESAIECFNT--AETINPKSEYPPYYKADAYRDTENFEYALKYYDEALE 257
+G++ +L+ YE A+ + + + YY+ + +++ AL +D+A+
Sbjct: 239 QRGHTLAQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIA 298
Query: 258 INPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDP 294
NP ++ ++ ++ AAI++ AI LDP
Sbjct: 299 GNPDLAEAWYNRAALHARLDQPVAAIADLQQAIALDP 335
Score = 68.2 bits (165), Expect = 3e-16
Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 34/221 (15%)
Query: 113 LEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYNKGETQF 172
L YD L + N W N+GI L + R++EA+ ++ ++ I + + N+
Sbjct: 16 LAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLE 75
Query: 173 KLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPP 232
LG ++++SY +AL ID + +G KL E AI
Sbjct: 76 HLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIAS--------------- 120
Query: 233 YYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQL 292
Y +A+ + + + G L + Y A+ +++ ++ +
Sbjct: 121 -------------------YQQAIALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAI 161
Query: 293 DPKNVQIWILKGNSYVGLKDYESSISCYKKALEIEPKNENA 333
DP W G Y+ + + ++ C +A+ ++P+ A
Sbjct: 162 DPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATA 202
Score = 62.4 bits (150), Expect = 2e-14
Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 36/228 (15%)
Query: 25 SKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDK 84
++++ + G L+ QG Y +++ Y ++ +P + W G L + ++ C D+
Sbjct: 132 AQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQ 191
Query: 85 ALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYS 144
A+ + P+ + A+ G L G Y AL Y+ + + +G TL ++RY
Sbjct: 192 AIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYE 251
Query: 145 EAID------------------------------------CFDKSISINAKNSDVWYNKG 168
EA+ FD++I+ N ++ WYN+
Sbjct: 252 EALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRA 311
Query: 169 ETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIE 216
+L + +I +A+ +D +L + Y L + I+
Sbjct: 312 ALHARLDQPVAAIADLQQAIALDPDTYRSLAAEDPDYQTLHAHPDWIQ 359
Score = 46.2 bits (108), Expect = 1e-09
Identities = 34/156 (21%), Positives = 69/156 (44%)
Query: 178 EKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKAD 237
E + +Y+ L + + T +G +L + A+ +N A I P+ + +A
Sbjct: 13 EALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAI 72
Query: 238 AYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNV 297
A++ Y++AL I+ ++ ++GI L K+ AI+++ AI L
Sbjct: 73 VLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYA 132
Query: 298 QIWILKGNSYVGLKDYESSISCYKKALEIEPKNENA 333
Q W G + Y ++ Y++++ I+P +A
Sbjct: 133 QAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSA 168
Score = 35.0 bits (79), Expect = 3e-06
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 277 KNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKALEIEPKNENAKEN 336
++ A ++ +D ++ +P+N +W +G L + +++ Y ALEI P+ + A N
Sbjct: 10 QSLEALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNN 69
Query: 337 IDII 340
I+
Sbjct: 70 RAIV 73