Pairwise Alignments

Query, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 359 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 4/261 (1%)

Query: 84  KALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRY 143
           +A + +PE S   +  G+   K   + +AL +Y ++  ID +++      G     +  +
Sbjct: 30  QAAVPNPELSRLLDA-GSEAVKQRRWAEALGLYQQAQLIDGQDARIASAIGYLYTELGDF 88

Query: 144 SEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGN 203
            +A   F+++I+++++ +   +        LGEY  +   Y ++L +D K   A  G   
Sbjct: 89  RQAALSFERAIAMDSQTAAFAFGAATAYANLGEYAAAERYYEQSLRLDNKRAEAYRGLAT 148

Query: 204 SYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNS 263
              +  N   AI  +   + + P +  P       Y     F  AL+    A  + P  +
Sbjct: 149 VQQRRGNLVGAINTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAATRLAPREA 208

Query: 264 DILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKA 323
           DI  +  I    + N  AA+++   +I LDP+N +  +  G+ Y+ L D E++   Y++A
Sbjct: 209 DIYSNLAIAQLGLNNPRAALTSLQSSISLDPRNPRTLLKAGDIYLVLGDREAANRNYRRA 268

Query: 324 LEIEPKNENAKENIDIIEKII 344
            E+   N N+ + +D   +I+
Sbjct: 269 FEL---NRNSAKTLDRYTQIL 286



 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 1/238 (0%)

Query: 35  LYNQ-GNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDKALLIDPENS 93
           LY + G++  +   +  A+  + ++A        +   LG Y  +   ++++L +D + +
Sbjct: 81  LYTELGDFRQAALSFERAIAMDSQTAAFAFGAATAYANLGEYAAAERYYEQSLRLDNKRA 140

Query: 94  EAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAIDCFDKS 153
           EA+ GL TV  + GN   A+  Y +   ++  N +     G      ++++ A+     +
Sbjct: 141 EAYRGLATVQQRRGNLVGAINTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAA 200

Query: 154 ISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYES 213
             +  + +D++ N    Q  L     ++ S   ++ +D +    LL  G+ YL L + E+
Sbjct: 201 TRLAPREADIYSNLAIAQLGLNNPRAALTSLQSSISLDPRNPRTLLKAGDIYLVLGDREA 260

Query: 214 AIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGI 271
           A   +  A  +N  S            D  +   A  Y  +AL + P N D  +  G+
Sbjct: 261 ANRNYRRAFELNRNSAKTLDRYTQILLDQGDATLATVYLRDALRLEPRNPDFHLRLGL 318