Pairwise Alignments

Query, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 295 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 5/258 (1%)

Query: 3   KIVVFLTVILVLLMAGCIGDQKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIW 62
           K+  FL +   LL+AGC  D+    +  +      QG+  ++I+  +  +  NP   E +
Sbjct: 27  KLAAFLVLGSALLIAGCQTDKPESMFRVERA----QGSE-ENIASLSSVIASNPSDPEGY 81

Query: 63  VNKGNSLLKLGIYGESTECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNI 122
             +G++  + G +  +   FD+A+ ++P   +A+     V    GN Q AL  Y+ +L I
Sbjct: 82  NVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRALVQRNLGNQQAALADYNAALQI 141

Query: 123 DSENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSID 182
           +     A+  +G       +   A + F+K+I ++  +   ++N+G       ++ ++I+
Sbjct: 142 NPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIELDTADPRAYHNRGLIYQARNQHAQAIE 201

Query: 183 SYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDT 242
            ++KA+ +         G+G SY+   + ++A   FNTA  +N K       +A  Y   
Sbjct: 202 DFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTAINLNGKLAESWANQALIYERR 261

Query: 243 ENFEYALKYYDEALEINP 260
            +   A K Y  AL ++P
Sbjct: 262 GDKAKAAKSYSHALSLDP 279



 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 49/210 (23%), Positives = 95/210 (45%)

Query: 128 EAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKA 187
           E +  +G        +  A+  FD++I +N +    + N+   Q  LG  + ++  YN A
Sbjct: 79  EGYNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRALVQRNLGNQQAALADYNAA 138

Query: 188 LLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEY 247
           L I+   + A +G+GN Y +    ++A   FN A  ++       + +   Y+       
Sbjct: 139 LQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIELDTADPRAYHNRGLIYQARNQHAQ 198

Query: 248 ALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSY 307
           A++ + +A+ ++PS+ +    +GI      +   A S+F+ AI L+ K  + W  +   Y
Sbjct: 199 AIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTAINLNGKLAESWANQALIY 258

Query: 308 VGLKDYESSISCYKKALEIEPKNENAKENI 337
               D   +   Y  AL ++PK E A+  +
Sbjct: 259 ERRGDKAKAAKSYSHALSLDPKYEPARAGL 288



 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 43/175 (24%), Positives = 87/175 (49%)

Query: 26  KSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDKA 85
           ++Y ++ L   N GN   ++++YN AL  NP     ++ +GN   +      +   F+KA
Sbjct: 113 QAYANRALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKA 172

Query: 86  LLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSE 145
           + +D  +  A++  G +      + +A+E + K++++   + E +  +GI+         
Sbjct: 173 IELDTADPRAYHNRGLIYQARNQHAQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDN 232

Query: 146 AIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLG 200
           A   F+ +I++N K ++ W N+     + G+  K+  SY+ AL +D K E A  G
Sbjct: 233 AFSDFNTAINLNGKLAESWANQALIYERRGDKAKAAKSYSHALSLDPKYEPARAG 287



 Score = 67.4 bits (163), Expect = 4e-16
 Identities = 39/189 (20%), Positives = 89/189 (47%)

Query: 141 QRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLG 200
           Q   E I      I+ N  + + +  +G    + GE+ +++  +++A+ ++ +   A   
Sbjct: 58  QGSEENIASLSSVIASNPSDPEGYNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYAN 117

Query: 201 KGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALEINP 260
           +      L N ++A+  +N A  INP  +     + + YR     + A   +++A+E++ 
Sbjct: 118 RALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIELDT 177

Query: 261 SNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCY 320
           ++     ++G+       ++ AI +F  AI L P + + +  +G SYV   D +++ S +
Sbjct: 178 ADPRAYHNRGLIYQARNQHAQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDF 237

Query: 321 KKALEIEPK 329
             A+ +  K
Sbjct: 238 NTAINLNGK 246



 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 29/134 (21%), Positives = 63/134 (47%)

Query: 207 KLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNSDIL 266
           + Q  E  I   ++    NP        +  AY     F  A+  +D+A+++NP      
Sbjct: 56  RAQGSEENIASLSSVIASNPSDPEGYNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAY 115

Query: 267 ISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKALEI 326
            ++ +    + N  AA+++++ A+Q++P     +I +GN Y      +++ + + KA+E+
Sbjct: 116 ANRALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIEL 175

Query: 327 EPKNENAKENIDII 340
           +  +  A  N  +I
Sbjct: 176 DTADPRAYHNRGLI 189



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 28  YNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDKALL 87
           YN +G+    QG+  ++ S++N A+  N K AE W N+     + G   ++ + +  AL 
Sbjct: 217 YNGRGISYVAQGDDDNAFSDFNTAINLNGKLAESWANQALIYERRGDKAKAAKSYSHALS 276

Query: 88  IDPENSEAFNGL 99
           +DP+   A  GL
Sbjct: 277 LDPKYEPARAGL 288