Pairwise Alignments

Query, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 714 a.a., hypothetical protein from Burkholderia phytofirmans PsJN

 Score = 74.7 bits (182), Expect = 7e-18
 Identities = 61/249 (24%), Positives = 108/249 (43%)

Query: 25  SKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFDK 84
           ++++ ++G+ L+      ++ + +  AL   P  AE+  N GN L++LG   E+   + +
Sbjct: 150 AEAHYNRGIVLHELRRPQEAEAAFRDALPGLPAHAEVHNNLGNVLMELGRLAEADAAYRE 209

Query: 85  ALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYS 144
           AL I P+  EA N LG VL  T  + +A   +  +L I  + +EA  N G  L + +R  
Sbjct: 210 ALTIRPQYPEALNNLGGVLKATFRHTEAELAFRLALAIRPDYAEALLNLGTVLADFERLP 269

Query: 145 EAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNS 204
           EA   +  +I+     ++  YN G T  K+    ++  +Y +A+ +   +  A    G  
Sbjct: 270 EAEAAYRDAIAQRPDYAEAHYNLGVTLCKMEHLFEAEAAYREAIRLRPDLVHAHNNLGCV 329

Query: 205 YLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNSD 264
             +L    +A++ F  A  + P      Y    A      F  A   Y  AL +     D
Sbjct: 330 LRRLDRLPAAVDAFEQALGVCPDMAEAHYNLGAARAQLMQFPEAESAYRRALALRADYGD 389

Query: 265 ILISKGICL 273
                 + L
Sbjct: 390 AKFGLSVLL 398



 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 71/319 (22%), Positives = 133/319 (41%), Gaps = 34/319 (10%)

Query: 56  PKSAEIWVNKGNSLLKLGIYGESTECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEM 115
           P  A+++ + G  L  LG    +   + + + + P + +A N LG VL   G  ++A   
Sbjct: 79  PDYADVYGSLGMLLKSLGRLSAAKAMYRQLVALRPGDPDARNHLGAVLYGLGYKEEAEAS 138

Query: 116 YDKSLNIDSENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLG 175
           Y ++L I  + +EA  N+GI L+ ++R  EA   F  ++     +++V  N G    +LG
Sbjct: 139 YRQALAIRPDYAEAHYNRGIVLHELRRPQEAEAAFRDALPGLPAHAEVHNNLGNVLMELG 198

Query: 176 EYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPK-------- 227
              ++  +Y +AL I  +   AL   G        +  A   F  A  I P         
Sbjct: 199 RLAEADAAYREALTIRPQYPEALNNLGGVLKATFRHTEAELAFRLALAIRPDYAEALLNL 258

Query: 228 ----SEYPPYYKADA-YRDT--ENFEYALKYYD-------------------EALEINPS 261
               +++    +A+A YRD   +  +YA  +Y+                   EA+ + P 
Sbjct: 259 GTVLADFERLPEAEAAYRDAIAQRPDYAEAHYNLGVTLCKMEHLFEAEAAYREAIRLRPD 318

Query: 262 NSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYK 321
                 + G  L ++    AA+  F+ A+ + P   +     G +   L  +  + S Y+
Sbjct: 319 LVHAHNNLGCVLRRLDRLPAAVDAFEQALGVCPDMAEAHYNLGAARAQLMQFPEAESAYR 378

Query: 322 KALEIEPKNENAKENIDII 340
           +AL +     +AK  + ++
Sbjct: 379 RALALRADYGDAKFGLSVL 397



 Score = 60.5 bits (145), Expect = 1e-13
 Identities = 44/193 (22%), Positives = 84/193 (43%)

Query: 20  IGDQKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGEST 79
           I  Q  ++ N+ G  L     + ++   + LAL   P  AE  +N G  L       E+ 
Sbjct: 213 IRPQYPEALNNLGGVLKATFRHTEAELAFRLALAIRPDYAEALLNLGTVLADFERLPEAE 272

Query: 80  ECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNN 139
             +  A+   P+ +EA   LG  L K  +  +A   Y +++ +  +   A  N G  L  
Sbjct: 273 AAYRDAIAQRPDYAEAHYNLGVTLCKMEHLFEAEAAYREAIRLRPDLVHAHNNLGCVLRR 332

Query: 140 MQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALL 199
           + R   A+D F++++ +    ++  YN G  + +L ++ ++  +Y +AL +      A  
Sbjct: 333 LDRLPAAVDAFEQALGVCPDMAEAHYNLGAARAQLMQFPEAESAYRRALALRADYGDAKF 392

Query: 200 GKGNSYLKLQNYE 212
           G     L +  +E
Sbjct: 393 GLSVLLLGMGRFE 405



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 248 ALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSY 307
           A +Y+   L++ P  +D+  S G+ L  +   SAA + +   + L P +       G   
Sbjct: 67  AERYWRRCLQLRPDYADVYGSLGMLLKSLGRLSAAKAMYRQLVALRPGDPDARNHLGAVL 126

Query: 308 VGLKDYESSISCYKKALEIEPKNENAKENIDII 340
            GL   E + + Y++AL I P    A  N  I+
Sbjct: 127 YGLGYKEEAEASYRQALAIRPDYAEAHYNRGIV 159