Pairwise Alignments

Query, 892 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

Subject, 457 a.a., periplasmic copper-binding (RefSeq) from Shewanella loihica PV-4

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 35/311 (11%)

Query: 85  GNKLSGNYEGRGISISGNNVSLKNGVVSNFDYGIVLENAENCKISNNEVFGN-------T 137
           G+ L+    G     S + + ++   +    +GI L+  +  K+ +N + GN        
Sbjct: 123 GDDLTAQDAGIYSDQSASELVIRENRLQGDGFGIWLQKGKEIKVHHNRIQGNPGLRSADR 182

Query: 138 YDGIYILNSKNNDISENLVYENGVIGIVTSGIFLDGSEFNNITKNTVNNNIYNGIELLNS 197
            +GI +   +N ++S+N V +         GI++  S+ N I  NT++N  Y GI  + S
Sbjct: 183 GNGIQLSIVQNVEVSDNEVNQ------TRDGIYIISSQHNTIKNNTMHNLRY-GIHYMYS 235

Query: 198 KNNLISGNNVFENEDNGVFVWNSKNNSIIFNELYQNENNGILTRESKFNTIESNNIFEND 257
            +N +  N  ++    G  + +S+  ++  NE   +++ G L     ++ I  N I+   
Sbjct: 236 HSNRVQDNLAYDTR-AGYALMSSRQLTVSGNESRDSQDYGFLMNFITYSEISHNRIYR-- 292

Query: 258 DSGIYSWKSFENTISKNKISKNSEGIILWNSDLNVLFKNKLLNNVKSGISIEFGTKYNTI 317
                 W   EN +    + +  +G+ ++NS  N +  N L++  + GI +  G+++  +
Sbjct: 293 -----VWTKPENKV----LGREGKGLFVYNSAYNSINHN-LIDTAEIGIHLTAGSEHTKV 342

Query: 318 YDNLF-NNSLNVRFEDSGKNYWNAPVINESNILEGEFTAGNVWYTPECTGFSQKAMNQDT 376
           + N F NN + V++  + +  W       S    G F +  + +  +  GF  +    + 
Sbjct: 343 FGNSFINNPVQVKYVANRQAEW-------SQDGRGNFWSNYLGWDLDNDGFGDRPFEPND 395

Query: 377 NGDTLSETYYE 387
             D L   Y E
Sbjct: 396 GIDKLIWQYPE 406



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 49/227 (21%)

Query: 71  GIEVNKSNIIIDLKGNKLSGN------YEGRGISISGNNVSLKNGVVS-NFDYGIVLENA 123
           GI  ++S   + ++ N+L G+       +G+ I +  N +    G+ S +   GI L   
Sbjct: 132 GIYSDQSASELVIRENRLQGDGFGIWLQKGKEIKVHHNRIQGNPGLRSADRGNGIQLSIV 191

Query: 124 ENCKISNNEVFGNTYDGIYILNSKNNDISENLVYENGVIGIVTSGIFLDGSEFNNITKNT 183
           +N ++S+NEV   T DGIYI++S++N I  N ++       +  GI    S  N +  N 
Sbjct: 192 QNVEVSDNEV-NQTRDGIYIISSQHNTIKNNTMHN------LRYGIHYMYSHSNRVQDNL 244

Query: 184 VNNNIYNGIELLNSKNNLISGNNVFENED------------------------------- 212
             +    G  L++S+   +SGN   +++D                               
Sbjct: 245 AYDT-RAGYALMSSRQLTVSGNESRDSQDYGFLMNFITYSEISHNRIYRVWTKPENKVLG 303

Query: 213 ---NGVFVWNSKNNSIIFNELYQNENNGILTRESKFNTIESNNIFEN 256
               G+FV+NS  NSI  N +   E    LT  S+   +  N+   N
Sbjct: 304 REGKGLFVYNSAYNSINHNLIDTAEIGIHLTAGSEHTKVFGNSFINN 350