Pairwise Alignments

Query, 892 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

Subject, 249 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 32/236 (13%)

Query: 6   VFLVMVILGAISGVFAEDTIIYVNDTHYWYQSGAFFESNNSIQDAVEYVPENGVVEVTTD 65
           VF+ M I  A +G        Y+N   Y            +I D+ +Y+     + ++  
Sbjct: 16  VFVSMSIACAAAGGEKGTNTNYINSLPY------------AINDSGKYL-----LNISQS 58

Query: 66  LKVSNGIEVNKSNIIIDLKGNKLSGN--YEG----RGISISG-NNVSLKNGVVSNFDYGI 118
             +   I +N  ++I+D  GN L G+  Y G     G+ +   + V++K+  +S F  GI
Sbjct: 59  GIIGTAITINADDVILDGNGNYLEGDDIYWGWMGDSGVYVYDCSKVTIKDMQISKFGSGI 118

Query: 119 VLENAENCKISNNEVFGNTYDGIYILNSKNNDISENLVYENGVIGIVTSGIFLDGSEFNN 178
            + NA  CKI  N    N  DGI    S NN+I +N V  N      T GI +D S  N 
Sbjct: 119 WINNATECKILKNNASDN-MDGIMAWYSDNNNIEDNFVCNN------TWGISVDLSTGNK 171

Query: 179 ITKNTVNNNIYNGIELLNSKNNLISGNNVFENEDNGVF-VWNSKNNSIIFNELYQN 233
           +  N VN N   G+++  S  N    N V  N + G++ +  S NNSII N    N
Sbjct: 172 VVNNIVNYNYQAGLDIQGSNCNRFITNEVSYNTNFGIWGIMGSTNNSIIANTALNN 227



 Score = 46.2 bits (108), Expect = 2e-09
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 190 NGIELLNSKNNLISGNNVFENEDNGVFVWNSKNNSIIFNELYQN--ENNGILTRESKFNT 247
           +G  LLN   + I G  +  N D+ +   N   N +  +++Y     ++G+   +    T
Sbjct: 48  SGKYLLNISQSGIIGTAITINADDVILDGNG--NYLEGDDIYWGWMGDSGVYVYDCSKVT 105

Query: 248 IESNNIFENDDSGIYSWKSFENTISKNKISKNSEGIILWNSDLNVLFKNKLLNNVKSGIS 307
           I+   I     SGI+   + E  I KN  S N +GI+ W SD N +  N + NN   GIS
Sbjct: 106 IKDMQI-SKFGSGIWINNATECKILKNNASDNMDGIMAWYSDNNNIEDNFVCNNT-WGIS 163

Query: 308 IEFGTKYNTIYDNLFNNSLNVRFEDSGKNYWNAPVINESNILEGEFTAGNVWYTPECTGF 367
           ++  T  N + +N+ N +     +  G N  N  + NE +      T   +W      G 
Sbjct: 164 VDLSTG-NKVVNNIVNYNYQAGLDIQGSN-CNRFITNEVSY----NTNFGIW------GI 211

Query: 368 SQKAMNQDTNGDTLSETYYE--LNSENI 393
                N       L+ + Y+  L+SENI
Sbjct: 212 MGSTNNSIIANTALNNSLYDISLDSENI 239



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 82  DLKGNKLSGNYEGRGISISGNNVSLKNGVVSNFDYGIVLENAENCKISNNEVFGNTYDGI 141
           +++ N +  N  G  + +S  N  + N V  N+  G+ ++ +   +   NEV  NT  GI
Sbjct: 149 NIEDNFVCNNTWGISVDLSTGNKVVNNIVNYNYQAGLDIQGSNCNRFITNEVSYNTNFGI 208

Query: 142 Y-ILNSKNNDISENLVYENGVIGI-VTSGIFLDGSEF 176
           + I+ S NN I  N    N +  I + S   L G+++
Sbjct: 209 WGIMGSTNNSIIANTALNNSLYDISLDSENILKGNKY 245