Pairwise Alignments

Query, 219 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 241 a.a., Putative Fe-S cluster (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.0 bits (136), Expect = 3e-13
 Identities = 64/221 (28%), Positives = 89/221 (40%), Gaps = 41/221 (18%)

Query: 11  LPGYNCKACGFKRCDLFAEKILEGENPENCPLLFKEEFKGNIEKIKEIASTLKPLEIKKT 70
           LPG NC  CGF+ C   AE+          P L K     +   ++     +     +  
Sbjct: 12  LPGKNCGVCGFRTCAELAER------SAGHPDLIKRCLPLSAASLEAEGPAVGRRPAQPV 65

Query: 71  CASKTG----LVGLLDGY-----------EADFLLDPLPEEHSCRETLIILSKNP----- 110
           C    G     V LL              E DF L+  PEE   RE  IIL  NP     
Sbjct: 66  CGGACGGAASSVDLLTARPETVWRDTLDREFDFFLEHFPEEPGPRE--IILPHNPLLTRE 123

Query: 111 --IKKGDHIKYRPLG----CPIPH--FAEIIDDAHGMYVVHLEGPCNRFNSEKIDYIEVG 162
             I+ GD +  RPLG    CPI H   A  +D   G+ V  + GP     + +  + ++G
Sbjct: 124 LEIEVGDILIGRPLGMSCGCPITHCGVAVEVDKRTGVIVWCVTGP---LGAREKGFKDLG 180

Query: 163 IALIAAFEG-VYNGKTP-EVGKTVKFIPTHCMMQKVHSGVV 201
             +   +EG +   + P  +G    F P  CM+Q  HSG+V
Sbjct: 181 YYIAEGYEGLITETRVPIRIGMRYYFQPRLCMLQWRHSGLV 221