Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 284 a.a., tRNA pseudouridine synthase A (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score = 60.8 bits (146), Expect = 3e-14
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 51/242 (21%)

Query: 22  TVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVVYEMDKKPVLPRVQSKLKW 81
           TV + + NAL           V L+  GRTD GV A G  V ++        +V+  +K 
Sbjct: 42  TVQETLENALSKVA----DSPVSLHCAGRTDAGVHACGQVVHFDT-------QVERSMK- 89

Query: 82  DGIWVLGCKK----------IEIFPEIEH-------RHYQYTLPNK-------------N 111
              WV+G              ++ P   H       R Y+Y + N              N
Sbjct: 90  --AWVMGANINLPHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQIRPAHLNEEITWN 147

Query: 112 H---DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKISSNDYFITIDIFGES 168
           H   DVE M +A++ L+G H F    +  + + K P++ L+ ++++ +   I +DI   +
Sbjct: 148 HRPLDVERMAEAAQYLVGVHDFSAF-RAGQCQAKSPIKELHHLRVTRHGKMIVLDIRASA 206

Query: 169 FLWNMVRRIIRLLSDIGKHKIENPEKFIELIL-SEDYKKGYPPSPAEGLILVDVKTNIDI 227
           FL +MVR I  +L  IG    E P ++I+ +L S   + G   +   GL LV V+   + 
Sbjct: 207 FLHHMVRNIAGVLMTIGAG--ERPVEWIKEVLDSRVRRSGGVTAHPFGLYLVQVEYRDEF 264

Query: 228 DL 229
           +L
Sbjct: 265 EL 266