Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 247 a.a., tRNA pseudouridine synthase A from Sinorhizobium meliloti 1021

 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 38/250 (15%)

Query: 2   YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALG 59
           Y   + YDG   + +Q Q +G +V   I  A+L       ++ V +   GRTD GV A G
Sbjct: 4   YRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSL----TRETVSIRGAGRTDSGVHARG 59

Query: 60  NYVVYEMDKKPVLPRVQSKLKWDGIWVLGCKKIEIFPEIE------------HRHYQYTL 107
                ++ ++     +Q+ L  +    L  +++ I    E             RHY Y +
Sbjct: 60  QVAHLDLTREWKSYTLQNAL--NAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRI 117

Query: 108 PNKNH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDI 151
            ++                  D + M +A+++L+G H F    +    +   P+RTL  +
Sbjct: 118 ISRRSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTF-RSAHCQATSPLRTLDRL 176

Query: 152 KISSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPS 211
            ++     I I    +SFL N +R     L  +G+ K   P+     + + D K   P +
Sbjct: 177 DVTRAGELIEIRATAQSFLHNQIRSFAGSLKLVGEGK-WTPDDLQAALEARDRKACGPVA 235

Query: 212 PAEGLILVDV 221
           P +GL  + V
Sbjct: 236 PPDGLYFMRV 245