Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 53/252 (21%)

Query: 6   IAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVV 63
           I YDG     +Q Q    +V  ++  AL     +   + + +   GRTD GV A G  V 
Sbjct: 7   IEYDGSKFYGWQRQAEVNSVQAELERALS----IVANEPIEVQCAGRTDAGVHATGQVVH 62

Query: 64  YEMDKKPVLPRVQSKLKWDGIWVLGCKKIEIFPEI------------------EHRHYQY 105
           ++           + ++ +G W LG   + +  +I                    R Y+Y
Sbjct: 63  FD----------TNAVRKEGAWTLGV-NVHLPDDIAVRWAMPVNDDFHARFSATARRYRY 111

Query: 106 TLPNKNH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLY 149
            + N N                 DVE M  A++ LIG   F +  +    +   P R ++
Sbjct: 112 VIFNHNFRPGILRKGVSHYHGDIDVERMHDAAQALIGERDFTSF-RAIGCQSNTPFRNVH 170

Query: 150 DIKISSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYP 209
            + +S +  +I +DI   +FL +MVR I+  L +IG    +  +    L+ ++D  +   
Sbjct: 171 KVSVSRHGMYIVVDIQANAFLHHMVRNIVGSLLEIGLGN-QPLDWMATLLEAKDRSQAAA 229

Query: 210 PSPAEGLILVDV 221
            +   GL LVDV
Sbjct: 230 TAKPHGLYLVDV 241