Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 278 a.a., Pseudouridylate synthase (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 34/248 (13%)

Query: 2   YIFKIAYDGK--LSFQTQPHGETVCDKISNALLD-CGYLDNKDRVPLYHGGRTDRGVAAL 58
           Y   + YDG+    +Q Q +G T+   +  A    CG         ++  GRTD GV AL
Sbjct: 4   YRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATR-----VHGSGRTDSGVHAL 58

Query: 59  GNYVVYEMDKK----PVLPRVQSKLKWDGIWVLGCKKI-EIFP---EIEHRHYQYTLPNK 110
           G     ++ +      V+  + + L+   I V+   ++ E F      E R Y+Y + N+
Sbjct: 59  GQVAHLDLPRAYGAATVMKALNAHLRPQPIAVIDAAEVAEDFHARFSAEERSYRYRILNR 118

Query: 111 ----------------NHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154
                             +  +M +A++ L+G H F +  +  + +   PV+TL +++++
Sbjct: 119 IAPPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSF-RAAECQADSPVKTLSELRVT 177

Query: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPAE 214
                I +     SFL + VR ++  L+ +G  +    ++    + + D     P +P +
Sbjct: 178 RVGDEIHVFARARSFLHHQVRNMVGTLALVGDGR-WTADRLRAALEACDRSAAGPTAPPD 236

Query: 215 GLILVDVK 222
           GL  + V+
Sbjct: 237 GLYFLRVR 244