Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 45/248 (18%)

Query: 6   IAYDGKLSF--QTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVV 63
           I YDG   F  Q Q   ++V  ++  AL    ++ N+  + +   GRTD GV A G  V 
Sbjct: 7   IEYDGSRYFGWQRQAEVDSVQAQLERAL---SFVANEP-ISIQCAGRTDAGVHATGQVVH 62

Query: 64  YEMDKKPVLPRVQSKLKW---------DGIWVLGCKKIEIFPEIEH----RHYQYTLPNK 110
           +E +       V+ +  W         D I V   K ++           R Y+Y + N 
Sbjct: 63  FETNA------VRKESAWTLGVNVNLPDDIAVRWAKDVDDEFHARFTATARRYRYMIYNH 116

Query: 111 NH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154
                             D   M +A++ L+G   F +  +  + +   P R ++++ ++
Sbjct: 117 QFRPGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSF-RAIQCQSNTPFRCVHEVNVT 175

Query: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFI-ELILSEDYKKGYPPSPA 213
               +I +DI   +FL +MVR I+  L ++G  +   P  +I EL+  +D  +    +  
Sbjct: 176 RQGMYICVDIKANAFLHHMVRNIVGSLLEVGYGR--QPVSWIKELLALKDRTQAAATAKP 233

Query: 214 EGLILVDV 221
            GL LVDV
Sbjct: 234 NGLYLVDV 241