Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 51/251 (20%)

Query: 6   IAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVV 63
           I YDG     +Q Q   ++V  ++  AL         + + L+  GRTD GV A G  V 
Sbjct: 7   IEYDGSGYFGWQRQAEVDSVQGQLEQALSKVA----NEPISLFCAGRTDAGVHATGQVVH 62

Query: 64  YEMDKKPVLPRVQSKLKWDGIWVLGCKK-------IEIFPEIEH----------RHYQYT 106
           +E +           ++ +G W LG          +    E++           R Y+Y 
Sbjct: 63  FETNA----------IRNEGAWTLGVNANLPDNIAVRWAKEVDDTFHARFSATARRYRYV 112

Query: 107 LPNKNH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYD 150
           + N N                 D + M  A++ L+G   F +  +  + + K P R ++ 
Sbjct: 113 IYNHNFRPGILRHGVSHYHGDIDTDKMHVAAQALLGEQDFTSF-RAIQCQSKTPFRNVHS 171

Query: 151 IKISSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPP 210
           +K++    ++ +DI   +FL +MVR I+  L +IG    +      +L+  +D  +    
Sbjct: 172 VKVTRQGMYVIVDISANAFLHHMVRNIVGSLLEIGLGN-QPLTWMADLLALKDRNQAAAT 230

Query: 211 SPAEGLILVDV 221
           +   GL LVDV
Sbjct: 231 AKPNGLYLVDV 241