Pairwise Alignments

Query, 351 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 295 a.a., small-conductance mechanosensitive channel MscS from Rahnella sp. WP5

 Score =  102 bits (253), Expect = 2e-26
 Identities = 73/273 (26%), Positives = 137/273 (50%), Gaps = 15/273 (5%)

Query: 83  DNLSLWL--NESLTV--AITFAGVLFLLKIVDDIIVNYVVPIVEK--SENTLDDQLVPLM 136
           +N   WL  N++L +  A+     +F+L IV  II   V   V +      +D  +   +
Sbjct: 11  NNAGNWLVRNQALLLHYAVNIVAAIFIL-IVGMIIARVVSGAVSRVLKVRGIDITVSDFL 69

Query: 137 RKLVKFLILIAGLMLILSNVGYNISALLAGLGIGGLAVALAAKDTIENLIAGFIIIVDRP 196
             +V++ I+   L+ +L  +G   ++++A +G  GLAV LA + ++ N  AG ++++ RP
Sbjct: 70  SAMVRYAIIAFTLIAVLGRIGVQTTSVIAVIGAAGLAVGLALQGSLSNFAAGVLLVIFRP 129

Query: 197 FKLGDWIKWGGKEGIVEEVGIRSTRVRSFGDTLITVPNANIVQTEIENFSERRKRQVKAT 256
           F+ G+++  GG  G V +V I ST +R+  + +I VPN  I+   I N S     +++ T
Sbjct: 130 FRAGEYVDLGGVAGTVTQVQIFSTTLRTPDNKIIVVPNGKIIAGNIINNSREPTSRIELT 189

Query: 257 IGLTYDTPVEKVKRAKEIIENVLNDHHGVV--DPIRVSFVEFGSFSLDLRVEYFVRDFGF 314
           +G+ YD+ ++ V   K I+ +++     V+    + V   E  + +L+  V  +  +   
Sbjct: 190 VGVGYDSDIDLV---KTILTDIITADQRVLKDKDVVVRLNEMAASTLNFIVYAWTSNGDA 246

Query: 315 DFFLNTKDEINIKIKEEFEKENIEFAFPTQTVY 347
               N K ++    K   +K NI  A+P   V+
Sbjct: 247 Q---NVKWDLLESFKRALDKNNINIAYPQMDVH 276