Pairwise Alignments

Query, 181 a.a., TATA-box-binding protein from Methanococcus maripaludis S2

Subject, 175 a.a., TATA-box-binding protein from Methanococcus maripaludis JJ

 Score =  123 bits (309), Expect = 2e-33
 Identities = 69/173 (39%), Positives = 107/173 (61%), Gaps = 3/173 (1%)

Query: 3   PEIKVVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLN 62
           PEIK+VNVV S  + T ++LE    +++NAEY+P+ +  +  R  + K  + IF+SGKLN
Sbjct: 4   PEIKIVNVVGSCDLKTPMNLEEIYPLIENAEYDPDSYHCVYIRRPDTKRIVTIFKSGKLN 63

Query: 63  CTGARCKEDAVIAINKIVKELKEAGMDLIDN-PEVKVQNMVATTELGMEPNLDDISTLEC 121
             G++  E+A  A+ ++V +L E  +D  D  P++K+ N+VA   L  + +L+++S    
Sbjct: 64  TAGSKSIEEAKSAVLEVVDKLNE--LDFTDKRPKIKIYNIVANIALNKKFDLEELSEHFG 121

Query: 122 TEYEPEQFPGLVYRLSEPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISKTLK 174
            EYEPEQFPG V +   PK   LIF SGK++I G+K  E+   A + I + LK
Sbjct: 122 AEYEPEQFPGAVLKTETPKATFLIFKSGKIIINGVKSNEELESAVNWILENLK 174



 Score = 52.4 bits (124), Expect = 4e-12
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 94  PEVKVQNMVATTELGMEPNLDDISTL-ECTEYEPEQFPGLVYRLSEPKVVVLIFGSGKVV 152
           PE+K+ N+V + +L    NL++I  L E  EY+P+ +  +  R  + K +V IF SGK+ 
Sbjct: 4   PEIKIVNVVGSCDLKTPMNLEEIYPLIENAEYDPDSYHCVYIRRPDTKRIVTIFKSGKLN 63

Query: 153 ITGLKVIEDAYIAFDKISKTLKELE 177
             G K IE+A  A  ++   L EL+
Sbjct: 64  TAGSKSIEEAKSAVLEVVDKLNELD 88