Pairwise Alignments

Query, 477 a.a., sodium:solute symporter from Methanococcus maripaludis S2

Subject, 589 a.a., large component of pyruvate/D-alanine transporter (actP-like) (from data) from Pseudomonas stutzeri RCH2

 Score =  111 bits (278), Expect = 6e-29
 Identities = 135/568 (23%), Positives = 225/568 (39%), Gaps = 105/568 (18%)

Query: 1   MIIGIATVTKKRIKGVSDFLLGGRNVNPWMSAFSYGTAYFSAVIFIGFAGKMGWSFGIPT 60
           + IGIA     R     +F + G  V+P  +  +    + SA  FI  AG +  S G  T
Sbjct: 17  LYIGIAVWA--RAGSTKEFYVAGGGVHPVTNGMATAADWMSAASFISMAGLIA-SGGYAT 73

Query: 61  MWIVVGNTIIGSFLAWQVLGKKTREMTQRLGASTMPSFLEKRYKSKNLESLTAFIIFFFL 120
              ++G T  G ++   +L        ++ G  T+P F+  R+ S+         +    
Sbjct: 74  SVYLMGWT--GGYV---LLAMLLAPYLRKFGKFTVPDFIGDRFYSRGARLTAVVCLILIS 128

Query: 121 VPYSASIYKGLNFLFEGF-GISPMNAYILMAALTAIYLYFGGFIAATLADFVQGCIMVIG 179
           V Y      G    F  F  +S      + AA+   Y  FGG    T     Q  +++I 
Sbjct: 129 VTYVIGQMAGAGVAFSRFLEVSNSAGIWIAAAIVFAYAVFGGMKGITYTQVAQYIVLIIA 188

Query: 180 VLLMVFFLGSN------PEVGGFSGMLSN----LSSIDPMLVTPINEASF-------IPI 222
             +   F+         P  G F   + +    L  +D  +VT +  A++       + +
Sbjct: 189 YTIPAVFIAMQLTGNPIPMFGMFGTHVDSGVPLLDKLD-QVVTDLGFAAYTADVDNKLNM 247

Query: 223 MGLALLTSIGSWGLPQMIHKFYTI-KSEKAAVSAKWVSTAFAFIITFGAAYIGTVSRL-- 279
               L   IG+ GLP +I +F+T+ K   A  SA W +  F  ++   A  + +++RL  
Sbjct: 248 FLFTLSLMIGTAGLPHVIIRFFTVPKVADARWSAGW-TLVFIALLYLTAPAVASMARLNL 306

Query: 280 --------------------------------------------FYPDAASKAAAGLT-- 293
                                                        Y DA +K     T  
Sbjct: 307 VNTIYPEGPQAEAIRYEDRPEWVQTWERTGLIKWEDKNADGRVQMYNDANAKFTPTATER 366

Query: 294 ---------SPDMIVPKIMEIA-LPDWVAALILVLVISASMSTLASLVLASSSVVSIDFV 343
                    + D+IV    EIA LP WV  LI    I+A++ST A L+LA SS +S D +
Sbjct: 367 GWNGNELTVNNDIIVLANPEIANLPGWVIGLIAAGAIAAALSTAAGLLLAISSAISHDLI 426

Query: 344 KGRLKTDLSDKNTMILMRLLCVLFVVLSFILAIVPNSYVLSLMALSWGLVSGCLLAPYFL 403
           K  +   +S+KN M+  RL     ++L+  L + P  +   ++AL++GL +  L     +
Sbjct: 427 KTLINPKISEKNEMLAARLSMTAAILLATWLGLNPPGFAAQVVALAFGLAAASLFPALMM 486

Query: 404 GLYWKRTTKEGVWAG-----ITSALAIMLGGAYYFGINSVYMP-------------AVGS 445
           G++ KR   +G  AG     I++A+ I L   ++F   +  +P             A G+
Sbjct: 487 GIFSKRVNSKGAVAGMLVGVISTAVYIFLYLGWFFIPGTASIPNTPDQWWMGISPQAFGA 546

Query: 446 LAMIAPIFVVMAVSLITKPFEREHIDYI 473
           +  +    V  AVS+ T+   +E  D +
Sbjct: 547 VGAMLNFAVAYAVSMATEAPPQEIQDLV 574