Pairwise Alignments

Query, 477 a.a., sodium:solute symporter from Methanococcus maripaludis S2

Subject, 246 a.a., hypothetical sodium/proline symporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.3 bits (207), Expect = 4e-21
 Identities = 54/222 (24%), Positives = 116/222 (52%), Gaps = 13/222 (5%)

Query: 169 DFVQGCIMVIGVLLMVFFLGSNPEVGGFSGMLSNLSSIDPMLVTPINEASFIPIMGLALL 228
           DF Q  +M+I +L++ F + S PE        + + SIDP ++  I++ + +  +   L 
Sbjct: 5   DFFQASLMLIALLIIPFAVFSRPESH------AGIESIDPAMLALISDKTTMIGLLSLLA 58

Query: 229 TSIGSWGLPQMIHKFYTIKSEKAAVSAKWVSTAFAFIITFGAAYIGTVSRLFYPDAASKA 288
             +G +G P ++ +F  I +  A  +++ ++ ++  +   GA   G    +++      A
Sbjct: 59  WGLGYFGQPHILSRFMAIGTVDALPTSRRIAMSWMILSLLGALATGLAGSVYF------A 112

Query: 289 AAGLTSPDMIVPKIMEIALPDWVAALILVLVISASMSTLASLVLASSSVVSIDFVKGRLK 348
              L + + +   + + A   W+  L++  ++SA MST+ S +L  SSV++ DF +  L+
Sbjct: 113 NEPLANAETVFFHLAQAAFNPWIGGLLIAAILSAIMSTIDSQLLVCSSVITEDFYRKWLR 172

Query: 349 TDLSDKNTMILMRLLCVLFVVLSFILAIVPNSYVLSLMALSW 390
               D+  M++ R+  +   V++ I+A+ P + VL+L++ +W
Sbjct: 173 -PTDDRELMMVGRMGVLAIAVIAGIIALNPENSVLNLVSYAW 213