Pairwise Alignments

Query, 477 a.a., sodium:solute symporter from Methanococcus maripaludis S2

Subject, 578 a.a., sodium/solute symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  117 bits (294), Expect = 8e-31
 Identities = 130/547 (23%), Positives = 219/547 (40%), Gaps = 96/547 (17%)

Query: 1   MIIGIATVTKKRIKGVSDFLLGGRNVNPWMSAFSYGTAYFSAVIFIGFAGKM---GWSFG 57
           + IGIA  T  R     +F + G  V+P ++  +    + SA  FI  AG +   G+   
Sbjct: 17  LYIGIALWT--RAGSTKEFYVAGGGVHPVVNGMATAADWMSAASFISLAGIVSFVGYDGS 74

Query: 58  IPTMWIVVGNTIIGSFLAWQVLGKKTREMTQRLGASTMPSFLEKRYKSKNLESLTAFIIF 117
           +  M    G  ++   +A            ++ G  T+P FL +RY S+   ++      
Sbjct: 75  VYLMGWTGGYVLLALCMA---------PYLRKFGKFTVPDFLGERYYSQAARTVAVICAI 125

Query: 118 FFLVPYSASIYKGLNFLFEGFGISPMNAYILMA-ALTAIYLYFGGFIAATLADFVQGCIM 176
           F    Y A   +G+  +F  F    ++  + +  A+   Y   GG    T     Q C++
Sbjct: 126 FICFTYIAGQMRGVGVVFSRFLEVEVDTGVYIGMAVVFFYSVLGGMKGITYTQVAQYCVL 185

Query: 177 VIGVLLMVFFLGSN------PEVG----------GFSGM-----LSNLSSIDPMLVTPIN 215
           +   ++   FL         P++G            SG+     L+NLS           
Sbjct: 186 IFAFMVPAIFLSVMMTGHIIPQIGFGAQLLDAAGNNSGVYLLDKLNNLSVDLGFAPYTDG 245

Query: 216 EASFIPIMGLALLTSIGSWGLPQMIHKFYTI-KSEKAAVSAKWVSTAFAFIITF------ 268
             S I ++ +     +G+ GLP +I +F+T+ K + A VSA W     A + T       
Sbjct: 246 SKSMIDVLCITGALMVGTAGLPHVIVRFFTVPKVKDARVSAGWALVFIAIMYTTVPALAA 305

Query: 269 ----------------GAAY------------IGTVS--------RLFYPDAASKAAAGL 292
                           G AY             G +         +++Y     + AA  
Sbjct: 306 FSRVNMIETINGPDQKGVAYETAPNWIKNWEKTGLIKWDDKNGDGKIYYATGKIEDAAST 365

Query: 293 TSP----DMIVPKIMEIA-LPDWVAALILVLVISASMSTLASLVLASSSVVSIDFVKGRL 347
                  D+IV    EIA LP WV AL+    ++A++ST A L+L  S+ VS D +K  L
Sbjct: 366 NEMKIDNDIIVLATPEIANLPAWVIALVAAGGLAAALSTSAGLLLVISTSVSHDLLKKNL 425

Query: 348 KTDLSDKNTMILMRLLCVLFVVLSFILAIVPNSYVLSLMALSWGLVSGCLLAPYFLGLYW 407
             ++SDK  ++  RL   + +V++    + P  +V +++A ++GL +  L     +G++ 
Sbjct: 426 MPNISDKKELMYARLAAGIGIVIAGYFGVNPPGFVAAVVAFAFGLAASSLFPAIIMGIFS 485

Query: 408 KRTTKEGVWAGITSALAIMLGGAYYFGI--NSVYMPA----------VGSLAMIAPIFVV 455
           K   KEG  AG+   L    G   YF     +  +PA          +G + M+    V 
Sbjct: 486 KTMNKEGAIAGMILGLFFTSGYIVYFKFIDPTANVPANWFLGISPEGIGMVGMVINFVVA 545

Query: 456 MAVSLIT 462
             VS +T
Sbjct: 546 AIVSKVT 552