Pairwise Alignments

Query, 477 a.a., sodium:solute symporter from Methanococcus maripaludis S2

Subject, 564 a.a., L-arabinose/L-arabinobiose symporter (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  101 bits (252), Expect = 6e-26
 Identities = 123/475 (25%), Positives = 214/475 (45%), Gaps = 62/475 (13%)

Query: 2   IIGIAT-VTKKRIKGVSDFLLGGRNVNPWMSAFSYGTAYFSAVI----FIGFAGKMGWSF 56
           +IGI   V +++    +D+ LGGR+   W++    G + F++ I     IG AG    S 
Sbjct: 16  LIGIIVWVVRQKQNDSADYFLGGRDAT-WLAI---GASIFASNIGSEHLIGLAGAGASSG 71

Query: 57  GIPTMWIVVGNTIIGSFLAWQVLGKKTREMTQRLGASTMPSFLEKRYKSKNLESLTAF-I 115
                W + G  I+   L W  +   +R M       TMP FLE+RY  ++   L+   +
Sbjct: 72  MAMAHWEIQGWMIL--ILGWVFVPFYSRSMVY-----TMPEFLERRYNPQSRTILSVISL 124

Query: 116 IFFFLVPYSASIYKGLNFLFEGFGISPM-------NAYILMAALTAIYLYFGGFIAATLA 168
           + + L   + ++Y G     + FGI  +        A I +  LTA+Y  FGG  +    
Sbjct: 125 VSYVLTKVAVTVYAGGLVFQQVFGIKELWGIDFFWIAAIGLVVLTALYTIFGGMKSVLYT 184

Query: 169 DFVQGCIMVIGVLLMVFFLGSNPEVGGFSGMLSNLSSI------DPM--LVTPINEASFI 220
             +Q  I+++G L+ +  LG   E+GG+  M+    ++      D M  L+   ++A+F 
Sbjct: 185 SVLQTPILLLGSLI-ILVLGFK-ELGGWDEMMRVCGAVTVNDYGDTMTNLIRSNDDANFP 242

Query: 221 PIMGLALLTSIGSWGL---PQMIHKFYTIKSEKAA----VSAKWVS--TAFAFII----- 266
            +  L     IG W       ++ +  + K+EK A    +   ++     F F+I     
Sbjct: 243 WLGALIGSAIIGFWYWCTDQFIVQRVLSGKNEKEARRGTIFGAYLKLLPVFLFLIPGMIA 302

Query: 267 -TFGAAYIGTVSRLFYPDAASKAAAGLTSPDMIVPKIMEIALPDWVAALILVLVISASMS 325
                 YIG     F P  A+    G  + D   P ++   LP  V  L++  +++A MS
Sbjct: 303 FALHQKYIGAGGEGFLPMLAN----GTANADAAFPTLVAKLLPAGVKGLVVCGILAALMS 358

Query: 326 TLASLVLASSSVVSIDFVKGRLKTDLSDKNTMILMRLLCVLFVVLSF----ILAIVPNSY 381
           +LASL  +S+ + +IDF K R + +  +K  + + ++  V+ V+L      I+  V +  
Sbjct: 359 SLASLFNSSAMLFTIDFYK-RFRPETPEKKLVGIGQIATVVIVILGILWIPIMRSVGDVL 417

Query: 382 VLSLMALSWGLVSGCLLAPYFLGLYWKRTTKEGVWAGITSALAI---MLGGAYYF 433
              L  +   L  G + A + LG+ WKRT+ +G   G+ + + I    LG   Y+
Sbjct: 418 YTYLQDVQSVLAPG-IAAAFLLGICWKRTSAQGGMWGLIAGMIIGLTRLGAKVYY 471