Pairwise Alignments

Query, 477 a.a., sodium:solute symporter from Methanococcus maripaludis S2

Subject, 578 a.a., Na+/solute symporter (RefSeq) from Shewanella sp. ANA-3

 Score =  115 bits (287), Expect = 5e-30
 Identities = 122/507 (24%), Positives = 207/507 (40%), Gaps = 86/507 (16%)

Query: 1   MIIGIATVTKKRIKGVSDFLLGGRNVNPWMSAFSYGTAYFSAVIFIGFAGKM---GWSFG 57
           + IGIA  +  R     +F + G  V+P ++  +    + SA  FI  AG +   G+   
Sbjct: 17  LYIGIAIWS--RAGSTKEFYVAGGGVHPVVNGMATAADWMSAASFISLAGIVSFVGYDGS 74

Query: 58  IPTMWIVVGNTIIGSFLAWQVLGKKTREMTQRLGASTMPSFLEKRYKSKNLESLTAFIIF 117
           +  M    G  ++   +A            ++ G  T+P F+ +RY S+   ++      
Sbjct: 75  VYLMGWTGGYVLLALCMA---------PYLRKFGKFTVPDFVGERYYSQAARTVAVICAI 125

Query: 118 FFLVPYSASIYKGLNFLFEGFGISPMNAYILMA-ALTAIYLYFGGFIAATLADFVQGCIM 176
           F    Y A   +G+  +F  F    ++  + +  A+   Y   GG    T     Q C++
Sbjct: 126 FICFTYIAGQMRGVGVVFSRFLEVDVDTGVYIGMAVVFFYAVLGGMKGITYTQVAQYCVL 185

Query: 177 VIGVLLMVFFLGSN------PEVG----------GFSGM-----LSNLSSIDPMLVTPIN 215
           +   ++   FL         P++G            SG+     L+NLS           
Sbjct: 186 IFAFMVPAIFLSVMMTGHIIPQIGFGAQLLDAAGNNSGVYLLEKLNNLSVDLGFAPYTDG 245

Query: 216 EASFIPIMGLALLTSIGSWGLPQMIHKFYTI-KSEKAAVSAKWVSTAFAFIITF------ 268
             S I +  +     +G+ GLP +I +F+T+ K + A VSA W     A + T       
Sbjct: 246 SKSMIDVFCITGALMVGTAGLPHVIVRFFTVPKVKDARVSAGWALVFIAIMYTTVPALAA 305

Query: 269 ----------------GAAY------------IGTVS--------RLFYP-----DAASK 287
                           G AY             G +         +++Y      DAAS 
Sbjct: 306 FSRVNMIETINGPDQKGVAYETAPDWIKNWEKTGLIKWDDKNGDGKIYYAKGKMEDAASP 365

Query: 288 AAAGLTSPDMIVPKIMEIA-LPDWVAALILVLVISASMSTLASLVLASSSVVSIDFVKGR 346
               + + D+IV    EIA LP WV AL+    ++A++ST A L+L  S+ VS D +K  
Sbjct: 366 NEMKIDN-DIIVLATPEIANLPAWVIALVAAGGLAAALSTSAGLLLVISTSVSHDLLKKN 424

Query: 347 LKTDLSDKNTMILMRLLCVLFVVLSFILAIVPNSYVLSLMALSWGLVSGCLLAPYFLGLY 406
           L  ++SDK  ++  RL   + +V++    + P  +V +++A ++GL +  L     +G++
Sbjct: 425 LMPNISDKKELMYARLAAGIGIVIAGYFGVNPPGFVAAVVAFAFGLAASSLFPAIIMGIF 484

Query: 407 WKRTTKEGVWAGITSALAIMLGGAYYF 433
            K   KEG  AG+   L    G   YF
Sbjct: 485 SKTMNKEGAIAGMVIGLLFTAGYIIYF 511