Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 458 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 19/208 (9%)

Query: 122 AAFAVLLAS-----FGWQIAMIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARK 176
           A  A+LLAS     + W +  + ++        G L+     +  Q  E    I      
Sbjct: 259 ATLAILLASLLVRRWNWSVRPLLMI--------GALVAASALLAPQWPELAMVIGIAGLM 310

Query: 177 IKELTQKERLKFAYDSTRDIVKRVWLYILIGIGIGAII------HGYAPEEVLAKYAGPE 230
           ++   Q    +     + D  K++   +L G+ I  ++       G  P E +    G  
Sbjct: 311 LQASRQNAASQEWVGQSWDFTKQIMPLLLGGVLIAGMLLGRPGHEGLIPSEWVVWAVGDN 370

Query: 231 NPLAVIFATIIAVPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPEAVLLRKV 290
           +  + + A+++   +Y + L  +PI E L+G G+G G ALA ++A  ALS P  +++R V
Sbjct: 371 SFTSTLLASVLGAFMYFSTLTEVPIVEGLLGAGMGKGPALAILLAGPALSLPNMLVIRTV 430

Query: 291 IKPKLIAVFFGITSIAIVITGYLFNILL 318
           +  +   V+  +  +   ++GYL+  L+
Sbjct: 431 LGTQKTIVYCSLVVVMATLSGYLYGQLM 458



 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 28/98 (28%), Positives = 46/98 (46%)

Query: 77  MASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQIA 136
           +AS+ GT+   CSC+ +P+F G    G  LG  ++FL + P +N  A  V     G ++ 
Sbjct: 115 VASIAGTLLAVCSCTVLPLFGGIYRRGAGLGAAIAFLYSGPAINVMAIVVTAKVLGAELG 174

Query: 137 MIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRA 174
           +   V  ++  +V G I+  L    +      S R  A
Sbjct: 175 IARAVGAIVFALVIGAIMHLLYRREEAARAAKSARGFA 212



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 23/85 (27%), Positives = 43/85 (50%)

Query: 73  SGNIMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFG 132
           +  ++AS+LG    F + + VPI  G + AG+  G  L+ L+  P ++     V+    G
Sbjct: 373 TSTLLASVLGAFMYFSTLTEVPIVEGLLGAGMGKGPALAILLAGPALSLPNMLVIRTVLG 432

Query: 133 WQIAMIYVVSGVIIGVVGGLIIGKL 157
            Q  ++Y    V++  + G + G+L
Sbjct: 433 TQKTIVYCSLVVVMATLSGYLYGQL 457



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 198 KRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIF--ATIIAVPLYSNALGTIPI 255
           + V L +L    I   +  Y  +  + K+ GP +P  V F  A+I    L   +   +P+
Sbjct: 74  EHVILCLLPAFVIAGAMAVYISQGAVMKHLGPASPKPVAFGVASIAGTLLAVCSCTVLPL 133

Query: 256 AEALIGKGVGIGTALAFMMATTALSFPEAVLLRKVIKPKL-IAVFFGITSIAIVITGYLF 314
              +  +G G+G A+AF+ +  A++    V+  KV+  +L IA   G    A+VI G + 
Sbjct: 134 FGGIYRRGAGLGAAIAFLYSGPAINVMAIVVTAKVLGAELGIARAVGAIVFALVI-GAIM 192

Query: 315 NIL 317
           ++L
Sbjct: 193 HLL 195