Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 335 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 57.0 bits (136), Expect = 6e-13
 Identities = 68/336 (20%), Positives = 133/336 (39%), Gaps = 57/336 (16%)

Query: 31  FFIYDSLKIVIL--LSIMIFSISYIRSYFPPEKTKKILERYSGVSGNIMASLLGTVTPFC 88
           F ++ SL +  L  L + +F  S +  +   +   +IL + + + G +  SL+G + P C
Sbjct: 8   FTLFLSLLVEALPFLLLGVFLSSLLLCFTNEKALLRILPK-NPLGGALAGSLVGFLFPAC 66

Query: 89  SCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQ--IAMIYVVSGVII 146
            C +VP+    I  G P  V + FL+ +P++N         +F  Q  I ++ V+  +II
Sbjct: 67  ECGNVPVTRRLILQGAPPAVAMGFLLAAPVINPIVIWSTWVAFRDQPEIVVLRVLFTMII 126

Query: 147 GVVGGLIIGK-------------------------------------LGMENQVEEYVYS 169
             + G +                                        LG  +Q      S
Sbjct: 127 ATLVGWVFSAQKDLRPILQRRTADLLELTCPRPTNDQPALLQRGTFFLGQGSQP---AAS 183

Query: 170 IRSRARKIKELTQK----ERLKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEE-VLA 224
           I   +  + EL        +L  A D+T   ++ +   +++G  + A+I  +AP E +L+
Sbjct: 184 IALESAIVSELAVPAGLWPKLSLALDNTLQELRDLGGVLILGSAVAALIQTFAPRELILS 243

Query: 225 KYAGPENPL--AVIFATIIAVPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFP 282
              GP   +   ++  T++++    +A   +  A          G  LAF++    +   
Sbjct: 244 LGQGPVTSVIAMLVLGTVVSICSTVDAFFALAFASVFTS-----GALLAFLVLGPMVDLK 298

Query: 283 EAVLLRKVIKPKLIAVFFGITSIAIVITGYLFNILL 318
              +L  V +P+ +   FG+T++   +     N  L
Sbjct: 299 GIGMLLTVFRPRAVIYLFGLTTVMTFLLCLAVNFYL 334