Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 342 a.a., Predicted permeases from Phaeobacter inhibens DSM 17395

 Score =  100 bits (250), Expect = 4e-26
 Identities = 56/258 (21%), Positives = 116/258 (44%), Gaps = 23/258 (8%)

Query: 77  MASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQIA 136
           +A++ G + PFCSC  +P   G +  G PL   ++F + SP+++     +   + GW  A
Sbjct: 91  LAAVFGGLAPFCSCEVIPFIAGLLALGAPLSAVMAFWLASPLIDPPTLLITAGALGWPFA 150

Query: 137 MIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARK-----------------IKE 179
           +   V+ V +G+ GG  I  L        +   +R                       +E
Sbjct: 151 IAKAVAAVALGLFGGFAIKAL---RGAGAFASPLRQAPTSGCCGCGAPKAEAPVWAFWRE 207

Query: 180 LTQKERLKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFAT 239
             ++ + +  + S    + +   ++ +   + A++  Y P +++A   G E  L +  A 
Sbjct: 208 PARRSQFRQEFISNGLFLVK---WLTLAYVLEALLVSYVPADLIATLVGGEGLLPIATAA 264

Query: 240 IIAVPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPEAVLLRKVIKPKLIAVF 299
           ++ +P Y N+    P+   L+ +G+  G A+AFM+A    S P    +  ++KP++ A +
Sbjct: 265 LVGMPAYLNSYVAPPLLAGLMDQGMSAGAAMAFMVAGAVSSIPAMAAVWSLVKPQVFATY 324

Query: 300 FGITSIAIVITGYLFNIL 317
             +     +++G LF ++
Sbjct: 325 LALGITGAILSGILFQMV 342



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 32  FIYDSLKIVILLSIMIFSISYIRSYFPPEKTKKILERYSGVSGNIMASLLGTVTPFCSCS 91
           FI + L +V  L++     + + SY P +    ++    G+     A+L+G      S  
Sbjct: 218 FISNGLFLVKWLTLAYVLEALLVSYVPADLIATLVGG-EGLLPIATAALVGMPAYLNSYV 276

Query: 92  SVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQIAMIYVVSGVIIGVVGG 151
           + P+  G ++ G+  G  ++F++   + +  A A + +    Q+   Y+  G+   ++ G
Sbjct: 277 APPLLAGLMDQGMSAGAAMAFMVAGAVSSIPAMAAVWSLVKPQVFATYLALGITGAILSG 336

Query: 152 LI 153
           ++
Sbjct: 337 IL 338